diff --git a/CHANGES b/CHANGES index e8aec34..708db49 100644 --- a/CHANGES +++ b/CHANGES @@ -1,48 +1,54 @@ ## FireCloud ### preprocess_hic -Snapshot ID 24 - - More accurate fastq file size calculation for many small files - -Snapshot ID 25 - - Fix to allow calculation of very small fastq sizes (that use scientific notation) - -Snapshot ID 26 - - Added cooler file as output +Snapshot ID 39 + - Fixed hicpro Dockerfile bug resulting in missing Hindiii resfrag files + - Increased disk size for sum_fastq_size task. TODO: replace with simpler docker image + - Use zcat -f for fastqs to allow compressed and/or uncompressed files -Snapshot ID 29 - - Added juicebox .hic as output +Snapshot ID 38 + - sparseHic task: increased memory from 60GB to 104GB and use a single core -Snapshot ID 31 - - Specify genome_id annotation for juicebox .hic +Snapshot ID 37 + - Fixed missing space bug (echo`date`) in cooler task -Snapshot ID 32 - - Added sparseHiC .rds as output +Snapshot ID 36 + - Dropped memory and disk size for hicpro_align now that iced memory leak is fixed -Snapshot ID 33 - - Increased disk size for hicpro_contact_matrices +Snapshot ID 35 + - Increased disk size for hicpro_align from 20GB to 40GB Snapshot ID 34 - Increased memory for hicpro_contact_matrices from 60GB to 208GB -Snapshot ID 35 - - Increased disk size for hicpro_align from 20GB to 40GB +Snapshot ID 33 + - Increased disk size for hicpro_contact_matrices + +Snapshot ID 32 + - Added sparseHiC .rds as output -Snapshot ID 36 - - Dropped memory and disk size for hicpro_align now that iced memory leak is fixed +Snapshot ID 31 + - Specify genome_id annotation for juicebox .hic + +Snapshot ID 29 + - Added juicebox .hic as output -Snapshot ID 37 - - Fixed missing space bug (echo`date`) in cooler task +Snapshot ID 26 + - Added cooler file as output -Snapshot ID 38 - - sparseHic task: increased memory from 60GB to 104GB and use a single core +Snapshot ID 25 + - Fix to allow calculation of very small fastq sizes (that use scientific notation) + +Snapshot ID 24 + - More accurate fastq file size calculation for many small files ### merge_hic_replicates +Snapshot ID 14 + - sparseHic task: increased memory from 60GB to 104GB and use a single core + Snapshot ID 10 - Changed cis_long_range_percent num_pairs input from Int to String to match count_pairs output (to allow 2+ billion reads) -Snapshot ID 14 - - sparseHic task: increased memory from 60GB to 104GB and use a single core