From fef72562bc66132d0fe4176cd88c37fc0075a62e Mon Sep 17 00:00:00 2001
From: Martin Aryee <martin.aryee@gmail.com>
Date: Thu, 31 Jan 2019 17:09:33 -0500
Subject: [PATCH] Increased boot disk size for sum_fastq_size

---
 CHANGES            | 5 ++++-
 preprocess_hic.wdl | 2 +-
 2 files changed, 5 insertions(+), 2 deletions(-)

diff --git a/CHANGES b/CHANGES
index 708db49..45957a6 100644
--- a/CHANGES
+++ b/CHANGES
@@ -1,10 +1,13 @@
 ## FireCloud
 ### preprocess_hic
 
+Snapshot ID 40
+    - Increased boot disk size for sum_fastq_size
+
 Snapshot ID 39
     - Fixed hicpro Dockerfile bug resulting in missing Hindiii resfrag files
     - Increased disk size for sum_fastq_size task. TODO: replace with simpler docker image
-	- Use zcat -f for fastqs to allow compressed and/or uncompressed files
+    - Use zcat -f for fastqs to allow compressed and/or uncompressed files
 
 Snapshot ID 38
     - sparseHic task: increased memory from 60GB to 104GB and use a single core
diff --git a/preprocess_hic.wdl b/preprocess_hic.wdl
index f02eecc..8d2dc03 100644
--- a/preprocess_hic.wdl
+++ b/preprocess_hic.wdl
@@ -112,7 +112,7 @@ task sum_fastq_size {
     }
     runtime {
         docker: "aryeelab/hicpro:latest"
-        disks: "local-disk 20 SSD"
+		bootDiskSizeGb: 20
     }
     output {
         Int gb = read_int(stdout())