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.pre-commit-config.yaml
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.pre-commit-config.yaml
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default_language_version:
python: python3
node: 16.14.2
repos:
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v4.4.0
hooks:
# list of supported hooks: https://pre-commit.com/hooks.html
- id: trailing-whitespace
exclude: .svg$
require_serial: true
- id: end-of-file-fixer
require_serial: true
- id: check-docstring-first
require_serial: true
- id: check-yaml
require_serial: true
- id: debug-statements
require_serial: true
- id: detect-private-key
require_serial: true
- id: check-executables-have-shebangs
require_serial: true
- id: check-toml
require_serial: true
- id: check-case-conflict
require_serial: true
- id: check-added-large-files
require_serial: true
# python code formatting
- repo: https://github.com/psf/black
rev: 23.7.0
hooks:
- id: black
require_serial: true
args: [--line-length, "99"]
# python import sorting
- repo: https://github.com/PyCQA/isort
rev: 5.12.0
hooks:
- id: isort
require_serial: true
args: ["--profile", "black", "--filter-files"]
# python upgrading syntax to newer version
- repo: https://github.com/asottile/pyupgrade
rev: v3.9.0
hooks:
- id: pyupgrade
require_serial: true
args: [--py38-plus]
# python docstring formatting
- repo: https://github.com/myint/docformatter
rev: v1.7.5
hooks:
- id: docformatter
require_serial: true
args: [--in-place, --wrap-summaries=99, --wrap-descriptions=99]
# python check (PEP8), programming errors and code complexity
- repo: https://github.com/PyCQA/flake8
rev: 6.0.0
hooks:
- id: flake8
require_serial: true
entry: pflake8
additional_dependencies: ["pyproject-flake8"]
# python security linter
- repo: https://github.com/PyCQA/bandit
rev: "1.7.5"
hooks:
- id: bandit
require_serial: true
args: ["-c", "pyproject.toml"]
additional_dependencies: ["bandit[toml]"]
# yaml formatting
- repo: https://github.com/pre-commit/mirrors-prettier
rev: v3.0.0
hooks:
- id: prettier
require_serial: true
types: [yaml]
# shell scripts linter
- repo: https://github.com/shellcheck-py/shellcheck-py
rev: v0.9.0.5
hooks:
- id: shellcheck
require_serial: true
args: ["-e", "SC2102"]
# md formatting
- repo: https://github.com/executablebooks/mdformat
rev: 0.7.16
hooks:
- id: mdformat
require_serial: true
args: ["--number"]
additional_dependencies:
- mdformat-gfm
- mdformat-tables
- mdformat_frontmatter
# - mdformat-toc
# - mdformat-black
# word spelling linter
- repo: https://github.com/codespell-project/codespell
rev: v2.2.5
hooks:
- id: codespell
require_serial: true
args:
- --skip=logs/**,data/**,*.ipynb
- --ignore-words-list=ot,hist
# jupyter notebook linting
- repo: https://github.com/nbQA-dev/nbQA
rev: 1.7.0
hooks:
- id: nbqa-black
args: ["--line-length=99"]
require_serial: true
- id: nbqa-isort
args: ["--profile=black"]
require_serial: true
- id: nbqa-flake8
args:
[
"--extend-ignore=E203,E402,E501,F401,F841,F821,F403,F405,F811",
"--exclude=logs/*,data/*,notebooks/*",
]
require_serial: true