From 3f962ef32581bfd420371c3b813d1a87a22e588f Mon Sep 17 00:00:00 2001 From: "mike.stackhouse" Date: Tue, 10 Jan 2023 14:00:27 +0000 Subject: [PATCH] doc updates, reorg, rerun pkgdown --- DESCRIPTION | 2 +- _pkgdown.yml | 5 +- docs/articles/denom.html | 110 ++++++++++++++++---------------- docs/news/index.html | 1 + docs/pkgdown.yml | 2 +- docs/reference/index.html | 21 ++++-- man/apply_conditional_format.Rd | 2 +- 7 files changed, 79 insertions(+), 64 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 9fea7b6a..7abc2517 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -20,7 +20,7 @@ Authors@R: person(given = "Nathan", family = "Kosiba", email = "Nathan.Kosiba@atorusresearch.com", - role = "aut", + role = "ctb", comment = c(ORCID = "0000-0001-5359-4234")), person(given = "Atorus Research LLC", role = "cph") diff --git a/_pkgdown.yml b/_pkgdown.yml index 5481f727..b638c118 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -98,6 +98,10 @@ reference: - get_metadata - append_metadata - starts_with('get_meta') +- title: Templates + desc: Layer Templates +- contents: + - new_layer_template - title: Post-pocessing desc: Post-pocessing functions - contents: @@ -117,7 +121,6 @@ reference: - treat_var - get_where.tplyr_layer - Tplyr - - new_layer_template - get_tplyr_regex articles: diff --git a/docs/articles/denom.html b/docs/articles/denom.html index c30661c7..1c83f8ec 100644 --- a/docs/articles/denom.html +++ b/docs/articles/denom.html @@ -1678,33 +1678,33 @@

Missing Counts MILD -21 (58.33%) -73 (75.26%) -42 (45.16%) +22 (59.46%) +73 (76.84%) +42 (44.68%) 1 1 MODERATE -15 (41.67%) -24 (24.74%) -48 (51.61%) +15 (40.54%) +21 (22.11%) +47 (50.00%) 1 2 SEVERE 0 ( 0.00%) -0 ( 0.00%) -3 ( 3.23%) +1 ( 1.05%) +5 ( 5.32%) 1 3 Missing -11 -14 -25 +10 +16 +24 1 Inf @@ -1812,9 +1812,9 @@

Adding a ‘Total’ Row F <65 -9 ( 17.0%) -3 ( 7.5%) -3 ( 6.0%) +7 ( 13.2%) +5 ( 12.5%) +4 ( 8.0%) 1 1 1 @@ -1822,9 +1822,9 @@

Adding a ‘Total’ Row F >80 -19 ( 35.8%) +17 ( 32.1%) 6 ( 15.0%) -14 ( 28.0%) +15 ( 30.0%) 1 1 2 @@ -1832,9 +1832,9 @@

Adding a ‘Total’ Row F 65-80 -18 ( 34.0%) +17 ( 32.1%) 23 ( 57.5%) -21 ( 42.0%) +23 ( 46.0%) 1 1 3 @@ -1842,9 +1842,9 @@

Adding a ‘Total’ Row F Missing -7 (13.2%) -8 (20.0%) -12 (24.0%) +12 (22.6%) +6 (15.0%) +8 (16.0%) 1 1 Inf @@ -1863,7 +1863,7 @@

Adding a ‘Total’ RowM <65 3 ( 9.1%) -4 ( 9.1%) +5 ( 11.4%) 3 ( 8.8%) 1 2 @@ -1872,9 +1872,9 @@

Adding a ‘Total’ Row M >80 -7 ( 21.2%) +5 ( 15.2%) 8 ( 18.2%) -10 ( 29.4%) +12 ( 35.3%) 1 2 2 @@ -1882,9 +1882,9 @@

Adding a ‘Total’ Row M 65-80 -15 ( 45.5%) -21 ( 47.7%) -17 ( 50.0%) +17 ( 51.5%) +18 ( 40.9%) +16 ( 47.1%) 1 2 3 @@ -1893,8 +1893,8 @@

Adding a ‘Total’ RowM Missing 8 (24.2%) -11 (25.0%) -4 (11.8%) +13 (29.5%) +3 ( 8.8%) 1 2 Inf @@ -1945,9 +1945,9 @@

Adding a ‘Total’ Row F All Age Groups -46 -32 -38 +41 +34 +42 1 1 -Inf @@ -1955,9 +1955,9 @@

Adding a ‘Total’ Row F <65 -9 ( 19.6%) -3 ( 9.4%) -3 ( 7.9%) +7 ( 17.1%) +5 ( 14.7%) +4 ( 9.5%) 1 1 1 @@ -1965,9 +1965,9 @@

Adding a ‘Total’ Row F >80 -19 ( 41.3%) -6 ( 18.8%) -14 ( 36.8%) +17 ( 41.5%) +6 ( 17.6%) +15 ( 35.7%) 1 1 2 @@ -1975,9 +1975,9 @@

Adding a ‘Total’ Row F 65-80 -18 ( 39.1%) -23 ( 71.9%) -21 ( 55.3%) +17 ( 41.5%) +23 ( 67.6%) +23 ( 54.8%) 1 1 3 @@ -1985,9 +1985,9 @@

Adding a ‘Total’ Row F Missing -7 -8 12 +6 +8 1 1 Inf @@ -1996,8 +1996,8 @@

Adding a ‘Total’ RowM All Age Groups 25 -33 -30 +31 +31 1 2 -Inf @@ -2006,8 +2006,8 @@

Adding a ‘Total’ RowM <65 3 ( 12.0%) -4 ( 12.1%) -3 ( 10.0%) +5 ( 16.1%) +3 ( 9.7%) 1 2 1 @@ -2015,9 +2015,9 @@

Adding a ‘Total’ Row M >80 -7 ( 28.0%) -8 ( 24.2%) -10 ( 33.3%) +5 ( 20.0%) +8 ( 25.8%) +12 ( 38.7%) 1 2 2 @@ -2025,9 +2025,9 @@

Adding a ‘Total’ Row M 65-80 -15 ( 60.0%) -21 ( 63.6%) -17 ( 56.7%) +17 ( 68.0%) +18 ( 58.1%) +16 ( 51.6%) 1 2 3 @@ -2036,8 +2036,8 @@

Adding a ‘Total’ RowM Missing 8 -11 -4 +13 +3 1 2 Inf diff --git a/docs/news/index.html b/docs/news/index.html index bdb8c213..c1376a68 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -91,6 +91,7 @@

Tplyr 1.1.0
  • Vignette reorganization, as well as new vignettes added
  • Bug fix for #115
    • +
  • Scroll bar added to articles menu on pkgdown (Thanks @mattroumaya and @MayaGans!!!)

    • Tplyr 1.0.2

    CRAN release: 2022-11-07

    diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 1451de78..9fd63c0b 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -18,7 +18,7 @@ articles: sort: sort.html styled-table: styled-table.html table: table.html -last_built: 2023-01-10T13:30Z +last_built: 2023-01-10T13:54Z urls: reference: https://atorus-research.github.io/Tplyr/reference article: https://atorus-research.github.io/Tplyr/articles diff --git a/docs/reference/index.html b/docs/reference/index.html index 6e4b2867..eee8a2a9 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -384,6 +384,22 @@

    Metadata Functions +

    Templates

    + +

    Layer Templates

    + + +

    + + + + +
    + + new_layer_template() remove_layer_template() get_layer_template() get_layer_templates() use_template() +
    +
    Create, view, extract, remove, and use Tplyr layer templates
    +

    Post-pocessing

    Post-pocessing functions

    @@ -468,11 +484,6 @@

    Helper functionsA grammar of summary data for clinical reports
    - new_layer_template() remove_layer_template() get_layer_template() get_layer_templates() use_template() -
    -
    Create, view, extract, remove, and use Tplyr layer templates
    -
    - get_tplyr_regex()
    Retrieve one of Tplyr's regular expressions
    diff --git a/man/apply_conditional_format.Rd b/man/apply_conditional_format.Rd index fab656b7..5565c034 100644 --- a/man/apply_conditional_format.Rd +++ b/man/apply_conditional_format.Rd @@ -13,7 +13,7 @@ apply_conditional_format( ) } \arguments{ -\item{string}{Target character vector where text may be replacemed} +\item{string}{Target character vector where text may be replaced} \item{format_group}{An integer representing the targeted numeric field within the string, numbered from left to right}