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conda.yaml
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conda.yaml
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name: graphqa
channels:
- pytorch
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- anyio=2.2.0=py38h06a4308_0
- appdirs=1.4.4=py_0
- argon2-cffi=20.1.0=py38h27cfd23_1
- asn1crypto=1.4.0=pyh9f0ad1d_0
- async_generator=1.10=pyhd3eb1b0_0
- attrs=20.3.0=pyhd3eb1b0_0
- babel=2.9.0=pyhd3eb1b0_0
- backcall=0.2.0=pyhd3eb1b0_0
- beautifulsoup4=4.9.3=pyhb0f4dca_0
- black=19.10b0=py_0
- blas=1.0=mkl
- bleach=3.3.0=pyhd3eb1b0_0
- brotlipy=0.7.0=py38h27cfd23_1003
- ca-certificates=2021.1.19=h06a4308_1
- certifi=2020.12.5=py38h578d9bd_1
- cffi=1.14.0=py38h2e261b9_0
- chardet=4.0.0=py38h06a4308_1003
- click=7.1.2=pyhd3eb1b0_0
- cryptography=3.4.7=py38hd23ed53_0
- cudatoolkit=10.2.89=hfd86e86_1
- cycler=0.10.0=py38_0
- dbus=1.13.18=hb2f20db_0
- decorator=4.4.2=py_0
- defusedxml=0.7.1=pyhd3eb1b0_0
- docker-pycreds=0.4.0=py_0
- entrypoints=0.3=py38_0
- expat=2.3.0=h2531618_2
- fontconfig=2.13.1=h6c09931_0
- freetype=2.10.4=h5ab3b9f_0
- glib=2.63.1=h5a9c865_0
- gst-plugins-base=1.14.0=hbbd80ab_1
- gstreamer=1.14.0=hb453b48_1
- hmmer=3.3.2=he1b5a44_0
- icu=58.2=he6710b0_3
- idna=2.10=pyhd3eb1b0_0
- importlib-metadata=3.7.3=py38h06a4308_1
- importlib_metadata=3.7.3=hd3eb1b0_1
- intel-openmp=2020.2=254
- ipykernel=5.3.4=py38h5ca1d4c_0
- ipython=7.22.0=py38hb070fc8_0
- ipython_genutils=0.2.0=py38_0
- ipywidgets=7.6.3=pyhd3deb0d_0
- isort=5.8.0=pyhd3eb1b0_0
- jedi=0.17.2=py38h06a4308_1
- jinja2=2.11.3=pyhd3eb1b0_0
- joblib=1.0.1=pyhd3eb1b0_0
- jpeg=9b=h024ee3a_2
- json5=0.9.5=py_0
- jsonschema=3.2.0=py38_1
- jupyter-packaging=0.7.12=pyhd3eb1b0_0
- jupyter_client=6.1.12=pyhd3eb1b0_0
- jupyter_console=6.4.0=pyhd3eb1b0_0
- jupyter_core=4.7.1=py38h06a4308_0
- jupyter_server=1.4.1=py38h06a4308_0
- jupyterlab=3.0.11=pyhd3eb1b0_1
- jupyterlab_pygments=0.1.2=py_0
- jupyterlab_server=2.4.0=pyhd3eb1b0_0
- jupyterlab_widgets=1.0.0=pyhd8ed1ab_1
- kiwisolver=1.3.1=py38h2531618_0
- lcms2=2.11=h396b838_0
- libblas=3.8.0=21_mkl
- libcblas=3.8.0=21_mkl
- libedit=3.1.20210216=h27cfd23_1
- libffi=3.2.1=hf484d3e_1007
- libgcc-ng=9.3.0=h2828fa1_18
- libgfortran-ng=7.3.0=hdf63c60_0
- libgomp=9.3.0=h2828fa1_18
- libpng=1.6.37=hbc83047_0
- libsodium=1.0.18=h7b6447c_0
- libstdcxx-ng=9.3.0=h6de172a_18
- libtiff=4.2.0=h3942068_0
- libuuid=1.0.3=h1bed415_2
- libuv=1.40.0=h7b6447c_0
- libwebp-base=1.2.0=h27cfd23_0
- libxcb=1.14=h7b6447c_0
- libxml2=2.9.10=hb55368b_3
- loguru=0.5.3=py38h32f6830_2
- lz4-c=1.9.3=h2531618_0
- markupsafe=1.1.1=py38h7b6447c_0
- matplotlib=3.3.4=py38h06a4308_0
- matplotlib-base=3.3.4=py38h62a2d02_0
- mistune=0.8.4=py38h7b6447c_1000
- mkl=2020.2=256
- mkl-service=2.3.0=py38he904b0f_0
- mkl_fft=1.3.0=py38h54f3939_0
- mkl_random=1.1.1=py38h0573a6f_0
- mypy_extensions=0.4.3=py38_0
- nbclassic=0.2.6=pyhd3eb1b0_0
- nbclient=0.5.3=pyhd3eb1b0_0
- nbconvert=6.0.7=py38_0
- nbformat=5.1.3=pyhd3eb1b0_0
- ncurses=6.2=he6710b0_1
- nest-asyncio=1.5.1=pyhd3eb1b0_0
- networkx=2.5.1=pyhd8ed1ab_0
- ninja=1.10.2=py38hff7bd54_0
- notebook=6.3.0=py38h06a4308_0
- numpy=1.19.2=py38h54aff64_0
- numpy-base=1.19.2=py38hfa32c7d_0
- olefile=0.46=py_0
- omegaconf=2.0.6=py38h578d9bd_0
- openssl=1.1.1k=h7f98852_0
- packaging=20.9=pyhd3eb1b0_0
- pandas=1.2.3=py38ha9443f7_0
- pandoc=2.12=h06a4308_0
- pandocfilters=1.4.3=py38h06a4308_1
- parso=0.7.0=py_0
- pathspec=0.7.0=py_0
- pcre=8.44=he6710b0_0
- pexpect=4.8.0=py38_0
- pickleshare=0.7.5=py38_1000
- pillow=8.2.0=py38he98fc37_0
- pip=21.0.1=py38h06a4308_0
- prometheus_client=0.10.0=pyhd3eb1b0_0
- prompt-toolkit=3.0.17=pyh06a4308_0
- prompt_toolkit=3.0.17=hd3eb1b0_0
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pycparser=2.20=py_2
- pygments=2.8.1=pyhd3eb1b0_0
- pyopenssl=20.0.1=pyhd3eb1b0_1
- pyparsing=2.4.7=pyhd3eb1b0_0
- pyqt=5.9.2=py38h05f1152_4
- pyrsistent=0.17.3=py38h7b6447c_0
- pysocks=1.7.1=py38_0
- python=3.8.0=h0371630_2
- python-dateutil=2.8.1=pyhd3eb1b0_0
- python_abi=3.8=1_cp38
- pytorch=1.8.1=py3.8_cuda10.2_cudnn7.6.5_0
- pytz=2021.1=pyhd3eb1b0_0
- pyzmq=20.0.0=py38h2531618_1
- qt=5.9.7=h5867ecd_1
- readline=7.0=h7b6447c_5
- regex=2021.3.17=py38h27cfd23_0
- requests=2.25.1=pyhd3eb1b0_0
- scikit-learn=0.24.1=py38h658cfdd_0
- scipy=1.6.2=py38h91f5cce_0
- seaborn=0.11.1=pyhd3eb1b0_0
- send2trash=1.5.0=py38_0
- setuptools=52.0.0=py38h06a4308_0
- sip=4.19.13=py38he6710b0_0
- six=1.15.0=py38h06a4308_0
- sniffio=1.2.0=py38h06a4308_1
- soupsieve=2.2.1=pyhd3eb1b0_0
- sqlite=3.33.0=h62c20be_0
- terminado=0.9.4=py38h06a4308_0
- testpath=0.4.4=pyhd3eb1b0_0
- threadpoolctl=2.1.0=pyh5ca1d4c_0
- tk=8.6.10=hbc83047_0
- toml=0.10.2=pyhd3eb1b0_0
- tornado=6.1=py38h27cfd23_0
- tqdm=4.59.0=pyhd8ed1ab_0
- traitlets=5.0.5=pyhd3eb1b0_0
- typed-ast=1.4.2=py38h27cfd23_1
- typing_extensions=3.7.4.3=pyha847dfd_0
- urllib3=1.26.4=pyhd3eb1b0_0
- wcwidth=0.2.5=py_0
- webencodings=0.5.1=py38_1
- websocket-client=0.58.0=py38h06a4308_4
- wheel=0.36.2=pyhd3eb1b0_0
- widgetsnbextension=3.5.1=py38h578d9bd_4
- xz=5.2.5=h7b6447c_0
- yaml=0.2.5=h516909a_0
- zeromq=4.3.4=h2531618_0
- zipp=3.4.1=pyhd3eb1b0_0
- zlib=1.2.11=h7b6447c_3
- zstd=1.4.5=h9ceee32_0
- pip:
- absl-py==0.12.0
- aiohttp==3.7.4.post0
- ase==3.21.1
- async-timeout==3.0.1
- cachetools==4.2.1
- configparser==5.0.2
- fsspec==0.8.7
- future==0.18.2
- gitdb==4.0.7
- gitpython==3.1.14
- google-auth==1.28.0
- google-auth-oauthlib==0.4.4
- googledrivedownloader==0.4
- grpcio==1.36.1
- h5py==3.2.1
- isodate==0.6.0
- llvmlite==0.36.0
- markdown==3.3.4
- multidict==5.1.0
- namesgenerator==0.3
- natsort==7.1.1
- numba==0.53.1
- oauthlib==3.1.0
- pathtools==0.1.2
- promise==2.3
- protobuf==3.15.7
- psutil==5.8.0
- pyasn1==0.4.8
- pyasn1-modules==0.2.8
- python-louvain==0.15
- pytorch-lightning==1.2.6
- pyyaml==5.3.1
- rdflib==5.0.0
- requests-oauthlib==1.3.0
- rsa==4.7.2
- sentry-sdk==1.0.0
- shortuuid==1.0.1
- smmap==4.0.0
- subprocess32==3.5.4
- tensorboard==2.4.1
- tensorboard-plugin-wit==1.8.0
- torch-cluster==1.5.9
- torch-geometric==1.6.3
- torch-scatter==2.0.6
- torch-sparse==0.6.9
- torch-spline-conv==1.2.1
- torchmetrics==0.2.0
- wandb==0.10.24
- werkzeug==1.0.1
- yarl==1.6.3