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SpliceSites
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SpliceSites
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#//https://metasystems.riken.jp/conjoing/faqs
#// GT-AG, GC-AG, CT-AG, GG-AG, GA-AG, CA-AG, GT-CG, GT-GG,
#// TG-AG, GT-TG, AT-AG, TC-AG, GT-AC, CC-AG, TT-AG,
#// GT-AA, AA-AG, GT-AT, GT-GC, AC-AG, AG-AG, CT-AT, GT-CC,
#// GA-CT, GT-CT, GT-GA, CC-GC, GG-GT, GT-GT, GT-TC, CT-TT, and GT-TT.
GT AG
GC AG
CT AG
GG AG
GA AG
CA AG
GT CG
GT GG
TG AG
GT TG
AT AG
TC AG
GT AC
CC AG
TT AG
GT AA
AA AG
GT AT
GT GC
AC AG
AG AG
CT AT
GT CC
GA CT
GT CT
GT GA
CC GC
GG GT
GT GT
GT TC
CT TT
GT TT
#
# //https://www.ncbi.nlm.nih.gov/pmc/articles/PMC84117/
AT AC
# //https://www.ncbi.nlm.nih.gov/pmc/articles/PMC113136/
CT GC
# //https://www.ncbi.nlm.nih.gov/pmc/articles/PMC84117/
AT AA
#GC CT
this splice is used by AT1G79350.1. But it is never reported before. switch it off here
#tair10
# dornors.push_back("GT"); acceptors.push_back("TA");
# dornors.push_back("TA"); acceptors.push_back("AG");
# dornors.push_back("TA"); acceptors.push_back("AT");
# dornors.push_back("AT"); acceptors.push_back("AT");
# dornors.push_back("CG"); acceptors.push_back("AG");
# dornors.push_back("TG"); acceptors.push_back("AT");