bash_profile

echo "starting bash_profile.."

# make a temp folder (ensure delete before logoff)
cd /cygdrive/c/Users/$USER/AppData/
mkdir -p tmp

# navigate to bin folder
cd /cygdrive/r/$USER/bin/

# set up paths for required tools
alias vim="/cygdrive/c/Program\ Files\ \(x86\)/Vim/vim81/vim.exe"
R_FILE=/cygdrive/c/Program\ Files/R/R-3.5.2/bin/Rscript.exe
if ! test -f "$R_FILE"; then
 alias Rscript="/cygdrive/c/Program\ Files/R/R-3.6.1/bin/Rscript.exe"
else
  alias Rscript="/cygdrive/c/Program\ Files/R/R-3.5.2/bin/Rscript.exe"
fi

# aliases
alias python="/cygdrive/c/Program\ Files/Python35/python/" #alias python="/cygdrive/c/Python27/python.exe"
alias bin="cd /cygdrive/r/$USER/bin/"
alias tmp="cd /cygdrive/c/Users/$USER/AppData/tmp/"
export PATH="$PATH:/cygdrive/r/$USER/bin"

# test if programs built
FILE=/cygdrive/r/$USER/bin/csv_slice.exe
if ! test -f "$FILE"; then
  echo "setting up command line utilities.."
  ./setup.sh
else
  echo "command line utils already set up.."
fi

# goto temp folder
cd /cygdrive/c/Users/$USER/AppData/tmp/