From a7630ec16538a9048b77698bff4c58a709f7845b Mon Sep 17 00:00:00 2001 From: Lauren Coombe Date: Thu, 4 Nov 2021 10:22:40 -0700 Subject: [PATCH] Fixes for ARCS-long target (#117) --- Examples/arcs-make | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Examples/arcs-make b/Examples/arcs-make index 401e0a3..9c51317 100755 --- a/Examples/arcs-make +++ b/Examples/arcs-make @@ -189,7 +189,7 @@ $(draft).tigmint.fa: $(draft).fa $(reads).fq.gz #Pre-processing long reads; cut into shorter segments (pseudo-linked reads) %.cut$(cut).fq.gz: $(long_reads) - $(gtime) sh -c 'gunzip -c $< | $(bin)../Examples/long-to-linked-pe -l$(cut) --fastq | $(gzip) > $@' + $(gtime) sh -c '$(bin)../src/long-to-linked-pe -l $(cut) -t $t -m2000 $(long_reads) | $(gzip) > $@' #Run ARCS