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87 Open 60 Closed
87 Open 60 Closed
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Issues list

Interpreting results with low sample size / Alternatives?
#154 opened Nov 13, 2024 by Skirnir3141
2
Inconsistent Contaminant Detection in Decontam with Read Count Threshold
#153 opened Nov 7, 2024 by blesso13
1
prevalence method in Decontam not Identifying contaminants with a single control sample
#152 opened Oct 30, 2024 by JayalalKJ
1
How to apply decontam to functional data
#151 opened Oct 2, 2024 by Ivy-ops
3
Batch-specific contaminant detection or not?
#150 opened Aug 7, 2024 by zztin
Importing dada2 output
#149 opened Jul 20, 2024 by nadeaujay
3
Use of frequency-based decontam method on Meta-transcriptomics data
#148 opened Jul 3, 2024 by achald7867
1
decontam use
#147 opened Jun 28, 2024 by Zarzarn95
3
EPI2ME decontam Oxford nanopore sequencing
#146 opened Apr 29, 2024 by CamillePhilippeSCI
2
Install issues
#145 opened Apr 21, 2024 by acrowell09
6
DNA concentrations for half of the samples are 0.1ng/ul before PCR. Can I do decontam?
#142 opened Feb 8, 2024 by sihanbu
2
Removal of contamination based on a negative control occurs when all of "P = NA"
#141 opened Jan 9, 2024 by 1023011930
16
Result vary as per sample size
#140 opened Nov 7, 2023 by achald7867
6
Selection of methods for different sample types and non-subjective strategy to select method and threshold
#139 opened Oct 31, 2023 by cBundg
2
a
#137 opened Sep 27, 2023 by cafferychen777
Problems with the decontamination of metagenomic data or viral data
#136 opened Sep 23, 2023 by 1023011930
6
Best way to use controls for multiple batches?
#135 opened Sep 19, 2023 by DrLCode
1
Is one negative control useless for this application?
#134 opened Jul 18, 2023 by lowrda
2
Here more NAs exist inside the calculated P-value and are classified as FALSE (non-contaminated features).
#133 opened Jul 8, 2023 by YMSen
3
How to use controls in multiple small batches over one experiment
#132 opened Jul 8, 2023 by AlexaBennett
2
very cross-contaminated samples
#131 opened Jul 3, 2023 by lauraDRH
6
isContaminant with batch option
#130 opened Jun 28, 2023 by Martinique-F
2
is "quant_reading" DNA concentration in some units or total DNA
#127 opened Apr 25, 2023 by Rob-murphys
5
Strange prevalence plot contamination in controls
#125 opened Mar 27, 2023 by ladywaspzhu
1
Positive control contamination
#123 opened Mar 10, 2023 by FarzanehRah
1
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