python_tests.yml

name: Python tests

on:
  push:
    branches: [master]
  pull_request:
    branches: [master]

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

jobs:
  build:
    strategy:
      fail-fast: false
      matrix:
        platform: [ubuntu-latest, macos-latest, windows-latest]
        python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']

    runs-on: ${{ matrix.platform }}

    steps:
      - uses: actions/checkout@v4
      - name: Set git name/email
        run: |
          git config --global user.email "bids.maintenance@gmail.com"
          git config --global user.name "bids-maintenance"
      - name: Set up Python ${{ matrix.python-version }}
        uses: conda-incubator/setup-miniconda@v3
        with:
          auto-update-conda: true
          python-version: ${{ matrix.python-version }}

      - name: Install git-annex ubuntu
        if: matrix.platform == 'ubuntu-latest'
        shell: bash -l {0}
        run: conda install -c conda-forge git-annex

      - name: Install git-annex macos
        if: matrix.platform == 'macos-latest'
        shell: bash -l {0}
        run: brew install git-annex

      - name: Install git-annex windows
        if: matrix.platform == 'windows-latest'
        uses: crazy-max/ghaction-chocolatey@v3
        with:
          args: install git-annex --yes --ignore-checksums
        continue-on-error: true  # This can fail for stupid reasons ¯\_(ツ)_/¯

      - name: Install remaining dependencies
        shell: bash -l {0}
        run: |
          which python
          pip install datalad
          pip install pytest pytest-sugar flake8 pydocstyle
          pip install -e ./bids-validator

      - name: Check formatting
        shell: bash -l {0}
        run: |
          cd bids-validator
          flake8 bids_validator
          pydocstyle bids_validator/bids_validator.py
      - name: Test with pytest
        shell: bash -l {0}
        run: |
          cd bids-validator
          pytest --doctest-modules bids_validator --verbose