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node_task.lua
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node_task.lua
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local fun = require('fun')
local log = require('log')
local json = require('json')
local defaultdict = require('pregel.utils.collections').defaultdict
local vertex_methods = require('pregel.vertex').vertex_methods
local constants = require('constants')
local message_command = constants.message_command
local node_status = constants.node_status
local task_phase = constants.task_phase
local GDParams = constants.GDParams
local SUFFIX_TRAIN = constants.SUFFIX_TRAIN
local SUFFIX_TEST = constants.SUFFIX_TEST
local GradientDescent = require('math.gd').GradientDescent
local PercentileCounter = require('math.pc').PercentileCounter
local MeasureAUC = require('math.auc').MeasureAUC
local utils = require('utils')
local math_round = utils.math_round
local log_features = utils.log_features
local NULL = json.NULL
local node_common_methods = require('node_common').methods
local node_task_methods = {
__init = function(self)
local taskName = self:get_value().name
log.info('<task node, %s> Initializing', taskName)
if self:get_status() == node_status.NEW then
self:set_status(node_status.WORKING)
end
local space_name = ('task_node_%s_ds'):format(taskName)
if box.space[space_name] == nil then
local space = box.schema.create_space(space_name, {
format = {
[1] = {name = 'id', type = 'num' },
[2] = {name = 'task_name', type = 'str' },
[3] = {name = 'suffix', type = 'str' },
[4] = {name = 'target_round', type = 'num' },
[5] = {name = 'target', type = 'num' },
[6] = {name = 'features', type = 'array'},
}
})
space:create_index('primary', {
type = 'TREE',
parts = {1, 'NUM'}
})
space:create_index('name', {
type = 'TREE',
parts = {2, 'STR', 3, 'STR', 4, 'NUM'},
unique = false
})
end
self.dataSetSpace = box.space[space_name]
end,
work = function(self)
local wc = self:get_worker_context()
local value = self:get_value()
local taskName = self:get_value().name
local phase = wc:getTaskPhase(taskName)
local report = wc:getTaskReport(taskName)
if phase == task_phase.SELECTION then
log.info('<task node, %s> SELECTION phase', taskName)
for _, task in wc.taskDataSet[taskName][2]:pairs() do
local ktype, kname, value = task:unpack()
local name = ('%s:%s'):format(ktype, kname)
-- log.info('<iterateDataSet, %s> send_message to <%s>', taskName, name)
self:send_message(name, {
sender = self:get_name(),
command = message_command.FETCH,
target = value,
features = NULL
})
end
log.info('<task node, %s> SELECTION phase done', taskName)
wc:setTaskPhase(taskName, task_phase.TRAINING)
elseif phase == task_phase.TRAINING then
log.info('<task node, %s> TRAINING phase', taskName)
local testVerticesFraction = GDParams['test.vertices.fraction']
log.info('Test vertices fraction %f', testVerticesFraction)
local n, recordCounts = self:saveDataSetToLocalSpace(
taskName, testVerticesFraction
)
if n == 0 then
log.warn('Master didn\'t receive any messages, so no training occured')
log.warn('Waiting one superstep')
return
end
log.info("TRAINING: %s", json.encode(recordCounts))
local trainCount, testCount = self:computeTrainTestRecordCounts(recordCounts);
report.ensemble_report.data.train_size = trainCount
report.ensemble_report.data.test_size = testCount
report.ensemble_report.data.n_features = #value.features
local d = #value.features
local trainBatchSize = GDParams['train.batch.size']
local testBatchSize = GDParams['test.batch.size']
local maxIter = GDParams['max.gd.iter']
local alpha = GDParams['gd.loss.averaging.factor']
local epsilon = GDParams['gd.loss.convergence.factor']
local params = self:train(taskName, recordCounts, d, maxIter,
trainBatchSize, testBatchSize, alpha,
epsilon)
value.features = params
self:set_value(value)
report.ensemble_report.ensemble.model = 'express-SGD'
local nCalibrationMessages = GDParams['n.calibration.vertices']
log.info('Number of calibration messages: %d', nCalibrationMessages)
local calibrationProb = math.min(
1.0 * nCalibrationMessages / #wc.randomVertexIds, 1.0
)
log.info('Probability to take message for calibration: %f',
calibrationProb)
local n = 0
for idx, randomID in wc:iterateRandomVertexIds() do
if math.random() < calibrationProb then
self:send_message(randomID, {
sender = self:get_name(),
command = message_command.PREDICT_CALIBRATION,
target = 0.0,
features = value.features,
})
n = n + 1
end
end
log.info('sent %d calibration messages. Waiting for response', n)
wc:setTaskPhase(taskName, task_phase.CALIBRATION)
elseif phase == task_phase.CALIBRATION then
log.info('<task node, %s> CALIBRATION phase', taskName)
local ds = PercentileCounter()
for _, msg, _ in self:pairs_messages() do
ds:addValue(msg.target)
end
if ds:getN() == 0 then
log.warn('Master didn\'t receive any messages, so no calibration occured')
log.warn('Waiting one superstep')
return
end
local cbp = GDParams['calibration.bucket.percents']
log.info('Calibration bucket percents %f', cbp)
local parametersAndCalibration = self:calibrate(value.features, ds,
#value.features, cbp)
log.info('parametersAndCalibration %d', #parametersAndCalibration)
local broadcast = {
sender = self:get_name(),
command = message_command.PREDICT,
target = 0.0,
features = parametersAndCalibration
}
log.info('<task node, %s> Set aggregator to broadcast model ' ..
'across all vertices to:', taskName)
log.info('<task node, %s> - command - PREDICT', taskName)
log.info("<task node, %s> - sender: %s", taskName, broadcast.sender)
log.info('<task node, %s> - features:', taskName)
log_features(("task node, %s"):format(taskName), broadcast.features)
self:set_aggregation(taskName, broadcast)
local category, parameters = self:applyModelToTestDataSets(taskName, parametersAndCalibration)
if #category == 0 then
log.warn('No prediction for test data set found')
end
local auc = MeasureAUC(category, parameters)
report.ensemble_report.area_under_roc_weighted_transformed = auc
log.info('<task node, %s> TRUE:', taskName)
log_features(("task node, %s"):format(taskName), category)
log.info('<task node, %s> PRED:', taskName)
log_features(("task node, %s"):format(taskName), parameters)
log.info('<task node, %s> AUC: %f', taskName, auc)
wc:setTaskPhase(taskName, task_phase.PREDICTION)
elseif phase == task_phase.PREDICTION then
log.info('<task node, %s> PREDICTION phase', taskName)
log.info("Calibrated data:")
local n = 1
for _, msg in self:pairs_messages() do
log.info('%d> %f', n, msg.target)
n = n + 1
end
if n == 0 then
log.info('Master didn\'t receive any messaged, so no prediction occured')
log.info('Waiting one superstep')
return
end
-- we may cleanup temporary files
wc:setTaskPhase(taskName, task_phase.DONE)
elseif phase == task_phase.DONE then
log.info('<task node, %s> DONE phase', taskName)
self:vote_halt()
self:set_status(node_status.INACTIVE)
else
assert(false)
end
end,
calibrate = function(self, param, ds, dim, calibrationBucketPercents)
local nPercentiles = math.floor(100 / calibrationBucketPercents) - 1;
log.info('Model dimensionality: %d, calibration bucket percents: %f',
dim, calibrationBucketPercents)
log.info('Number of calibration percentiles: %d', nPercentiles)
local parametersWithCalibration = fun.iter(param):chain(
fun.range(1, nPercentiles):map(function(p)
return ds:getPercentile((p + 1) * calibrationBucketPercents)
end)
):totable()
return parametersWithCalibration
end,
train = function(self, taskName, recordounts, dim, maxIter,
trainBatchSize, testBatchSize, alpha, epsilon)
log.info('<task node, %s> Initializing Gradient descent', taskName)
log.info('<task node, %s> - train batch size %d', taskName, trainBatchSize)
log.info('<task node, %s> - test batch size %d', taskName, testBatchSize)
log.info('<task node, %s> - maximum number of iteration %d', taskName, maxIter)
log.info('<task node, %s> - loss averaging factor %f', taskName, alpha)
log.info('<task node, %s> - loss convergence factor %f', taskName, epsilon)
local gd = GradientDescent('hinge', 'l2')
local param = gd:initialize(dim)
log.info('<task node, %s> initialized model parameters to:', taskName)
log_features(('task node, %s'):format(taskName), param)
local trainAverageLoss = nil
local testAverageLoss = nil
local function get_rtargets(self)
local acc = {n = 0}
self.dataSetSpace.index.name:pairs{taskName, 'test'}
:each(function(tuple)
local target_round = tuple[4]
if acc[acc.n] ~= target_round then
table.insert(acc, target_round)
acc.n = acc.n + 1
end
end)
return acc
end
local rtargets = get_rtargets(self)
for nIter = 1, maxIter do
local trainBatchLoss = 0.0
local testBatchLoss = 0.0
local trainBatchGradient = fun.duplicate(0.0):take(dim):totable()
for _, rtarget in ipairs(rtargets) do
do
local batchSize = testBatchSize
while batchSize > 0 do
self.dataSetSpace.index.name:pairs{taskName, 'test', rtarget}
:take(batchSize)
:all(function(tuple)
local target, features = tuple:unpack(5, 6)
-- log.info('- msgid: %d', tuple[1])
-- log.info('- target: %f', target)
-- log.info('- features')
-- log_features(('task node, %s'):format(taskName), features, 500)
local lg = gd:lossAndGradient(target, features, param)
testBatchLoss = testBatchLoss + lg[1] / testBatchSize
-- if fun.iter(lg):all(function(val)
-- return val == 0
-- end) == true then
-- log.info('<task node, %s> lossAnd' ..
-- 'Gradient has zeroed result',
-- taskName)
-- end
batchSize = batchSize - 1
-- log.info('"test" message processed, %d left', batchSize)
return batchSize > 0
end)
end
end
do
local batchSize = trainBatchSize
while batchSize > 0 do
self.dataSetSpace.index.name:pairs{taskName, 'train', rtarget}
:take(batchSize)
:all(function(tuple)
local target, features = tuple:unpack(5, 6)
-- log.info('- target: %f', target)
-- log.info('- features')
-- log_features(('task node, %s'):format(taskName), features, 500)
local lg = gd:lossAndGradient(target, features, param)
trainBatchLoss = trainBatchLoss + lg[1] / trainBatchSize
for i = 2, #lg do
trainBatchGradient[i - 1] = trainBatchGradient[i - 1] + lg[i]
end
-- if fun.iter(lg):all(function(val)
-- return val == 0
-- end) == true then
-- log.info('<task node, %s> lossAnd' ..
-- 'Gradient has zeroed result',
-- taskName)
-- end
batchSize = batchSize - 1
-- log.info('"train" message processed, %d left', batchSize)
return batchSize > 0
end)
end
end
end
if trainAverageLoss == nil then
trainAverageLoss = trainBatchLoss
else
trainAverageLoss = (1 - alpha) * trainAverageLoss +
alpha * trainBatchLoss
end
if testAverageLoss == nil then
testAverageLoss = testBatchLoss
else
local tal = (1 - alpha) * testAverageLoss +
alpha * testBatchLoss
if math.abs(testAverageLoss - tal) < epsilon then
log.info('<task node, %s> GD converged on iteration %d',
taskName, nIter)
break
end
testAverageLoss = tal
end
param = gd:update(nIter, param, trainBatchGradient)
log.info('<task node, %s> GD OUTPUT on iteration %d:', taskName, nIter)
log.info('<task node, %s> trainBatchLoss - %f, testBatchLoss - %f',
taskName, trainBatchLoss, testBatchLoss)
log.info('<task node, %s> trainAverageLoss - %f, testAverageLoss - %f',
taskName, trainAverageLoss, testAverageLoss)
end
log.info('<task node, %s> Finished GD, new parameters', taskName)
log_features(('task node, %s'):format(taskName), param)
self.dataSetSpace:truncate()
return param
end,
saveDataSetToLocalSpace = function(self, taskName, testVerticesFraction)
log.info('<task node, %s> Saving data to space %s',
taskName, self.dataSetSpace.name)
local cnt = 0
local recordCounts = defaultdict(function() return {
[SUFFIX_TEST] = 0,
[SUFFIX_TRAIN]= 0,
} end)
for _, msg in self:pairs_messages() do
local rtarget = math_round(msg.target)
local suffix = math.random() < testVerticesFraction and SUFFIX_TEST or SUFFIX_TRAIN
self.dataSetSpace:auto_increment{taskName, suffix, rtarget,
msg.target, msg.features}
recordCounts[rtarget][suffix] = recordCounts[rtarget][suffix] + 1
cnt = cnt + 1
end
local last = self.dataSetSpace.index.name:select(taskName, {
limit = 1
})[1]
while true do
if last == nil or last[2] ~= taskName then
break
end
local suffix, target = last:unpack(3, 4)
local cnt = self.dataSetSpace.index.name:count{taskName, suffix, target}
log.info('<task node, %s> Written data set: %s_%d_%s -> %d',
taskName, taskName, target, suffix, cnt)
last = self.dataSetSpace.index.name:select(
{taskName, suffix, target}, {limit = 1, iterator = 'GT'}
)[1]
end
return cnt, recordCounts
end,
removeDataSetLocalSpace = function(self, taskName, suffix, target)
log.info('<task node, %s> Removing all records for %s_%d_%s',
taskName, taskName, suffix, target)
local to_remove = self.dataSetSpace.index.name
:pairs{taskName, suffix, target}
:map(function(tuple)
return tuple[1]
end):totable()
fun.iter(to_remove):each(function(id)
self.dataSetSpace:delete(id)
end)
log.info('<task node, %s> Removed %d records', #to_remove)
end,
applyModelToTestDataSets = function(self, taskName, parameters)
local wc = self:get_worker_context()
local categories = {}
local predictions = {}
local last = self.dataSetSpace.index.name:select(taskName, {
limit = 1
})[1]
while true do
if last == nil or last[2] ~= taskName then
break
end
local suffix, target = last:unpack(3, 4)
if suffix == SUFFIX_TRAIN then
self.dataSetSpace.index.name:pairs{taskName, suffix, target}:map(function(tuple)
local target, features = tuple:unpack(5, 6)
table.insert(categories, target == -1 and 0 or 1)
table.insert(predictions,
self:predictCalibrated(parameters, features,
wc.calibrationBucketPercents)
)
end)
end
last = self.dataSetSpace.index.name:select(
{taskName, suffix, target}, {limit = 1, iterator = 'GT'}
)[1]
end
return categories, predictions
end,
saveReport = function(self, taskName, report, paths)
end,
computeTrainTestRecordCounts = function(self, recordCounts)
local trainCount, testCount = 0, 0
for k, v in pairs(recordCounts) do
log.info("k - %s, v - %s", json.encode(k), json.encode(v))
if v[SUFFIX_TEST] > 0 then
testCount = testCount + 1
end
if v[SUFFIX_TRAIN] > 0 then
trainCount = trainCount + 1
end
end
return trainCount, testCount
end,
}
local node_task_mt = {
__index = {}
}
for k, v in pairs(vertex_methods) do
node_task_mt.__index[k] = v
end
for k, v in pairs(node_common_methods) do
node_task_mt.__index[k] = v
end
for k, v in pairs(node_task_methods) do
node_task_mt.__index[k] = v
end
return {
mt = node_task_mt
}