-
Notifications
You must be signed in to change notification settings - Fork 0
/
setup.py
88 lines (74 loc) · 2.53 KB
/
setup.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
# -*- coding: utf-8 -*-
import codecs
import os
import re
import setuptools
BIO2BEL_MODULE = 'mgi'
PACKAGES = setuptools.find_packages(where='src')
META_PATH = os.path.join('src', 'bio2bel_{}'.format(BIO2BEL_MODULE), '__init__.py')
KEYWORDS = ['Biological Expression Language', 'BEL', 'Systems Biology', 'Networks Biology']
CLASSIFIERS = [
'Development Status :: 3 - Alpha',
'Environment :: Console',
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: MIT License',
'Operating System :: OS Independent',
'Programming Language :: Python',
'Programming Language :: Python :: 3.6',
'Topic :: Scientific/Engineering :: Bio-Informatics'
]
INSTALL_REQUIRES = [
'pandas',
'sqlalchemy',
'click',
'bio2bel',
'pybel',
]
ENTRY_POINTS = {
'bio2bel': [
'{mname} = bio2bel_{mname}'.format(mname=BIO2BEL_MODULE),
],
'console_scripts': [
'bio2bel_{mname} = bio2bel_{mname}.cli:main'.format(mname=BIO2BEL_MODULE),
]
}
HERE = os.path.abspath(os.path.dirname(__file__))
def read(*parts):
"""Build an absolute path from *parts* and return the contents of the resulting file. Assume UTF-8 encoding."""
with codecs.open(os.path.join(HERE, *parts), 'rb', 'utf-8') as f:
return f.read()
META_FILE = read(META_PATH)
def find_meta(meta):
"""Extract __*meta*__ from META_FILE"""
meta_match = re.search(
r'^__{meta}__ = ["\']([^"\']*)["\']'.format(meta=meta),
META_FILE, re.M
)
if meta_match:
return meta_match.group(1)
raise RuntimeError('Unable to find __{meta}__ string'.format(meta=meta))
def get_long_description():
"""Get the long_description from the README.rst file. Assume UTF-8 encoding."""
with codecs.open(os.path.join(HERE, 'README.rst'), encoding='utf-8') as f:
long_description = f.read()
return long_description
if __name__ == '__main__':
setuptools.setup(
name=find_meta('title'),
version=find_meta('version'),
description=find_meta('description'),
long_description=get_long_description(),
url=find_meta('url'),
author=find_meta('author'),
author_email=find_meta('email'),
maintainer='Charles Tapley Hoyt',
maintainer_email=find_meta('email'),
license=find_meta('license'),
classifiers=CLASSIFIERS,
keywords=KEYWORDS,
packages=PACKAGES,
package_dir={'': 'src'},
install_requires=INSTALL_REQUIRES,
entry_points=ENTRY_POINTS,
)