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DESCRIPTION
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DESCRIPTION
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Package: MMUPHin
Type: Package
Title: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in
Microbiome Studies
Version: 1.17.0
Author: Siyuan Ma
Maintainer: Siyuan MA <syma.research@gmail.com>
Description: MMUPHin is an R package for meta-analysis tasks of microbiome
cohorts. It has function interfaces for:
a) covariate-controlled batch- and cohort effect adjustment,
b) meta-analysis differential abundance testing,
c) meta-analysis unsupervised discrete structure (clustering) discovery, and
d) meta-analysis unsupervised continuous structure discovery.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.2.1
VignetteBuilder: knitr
SystemRequirements:
glpk (>= 4.57)
Depends: R (>= 3.6)
Imports:
Maaslin2,
metafor,
fpc,
igraph,
ggplot2,
dplyr,
tidyr,
stringr,
cowplot,
utils,
stats,
grDevices
Suggests:
testthat,
BiocStyle,
knitr,
rmarkdown,
magrittr,
vegan,
phyloseq,
curatedMetagenomicData,
genefilter
biocViews: Metagenomics, Microbiome, BatchEffect