DESCRIPTION

Package: melonnpan
Title: Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolite Profiles
Version: 0.99.0
Date: 2019-05-21
Authors@R: person("Himel", "Mallick", email = "hmallick@hsph.harvard.edu",
  role = c("aut", "cre"))
Description: MelonnPan is a computational method for predicting metabolite compositions from microbiome sequencing data. It uses elastic net regularization to infer which sequencing features are predictive and combines these features to estimate the composite metabolome. 
Depends: R (>= 3.6.0), plyr, dplyr, glmnet, foreach, getopt, doParallel, vegan, data.table, ggplot2, AssocTests, optparse, tibble
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
License: MIT 
LazyData: true
Encoding: UTF-8
RoxygenNote: 7.1.1
biocViews: Metagenomics, Software, Metabolomics