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Vagrantfile
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Vagrantfile
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# -*- mode: ruby -*-
# vi: set ft=ruby :
# All Vagrant configuration is done below. The "2" in Vagrant.configure
# configures the configuration version (we support older styles for
# backwards compatibility). Please don't change it unless you know what
# you're doing.
Vagrant.configure(2) do |config|
# The most common configuration options are documented and commented below.
# For a complete reference, please see the online documentation at
# https://docs.vagrantup.com.
# Every Vagrant development environment requires a box. You can search for
# boxes at https://atlas.hashicorp.com/search.
config.vm.box = "bottomly/HitWalker2_base"
# Disable automatic box update checking. If you disable this, then
# boxes will only be checked for updates when the user runs
# `vagrant box outdated`. This is not recommended.
config.vm.box_check_update = false
# Create a forwarded port mapping which allows access to a specific port
# within the machine from a port on the host machine. In the example below,
# accessing "localhost:8080" will access port 80 on the guest machine.
#config.vm.network "forwarded_port", guest: 80, host: 7080
# Create a private network, which allows host-only access to the machine
# using a specific IP.
config.vm.network "private_network", type: "dhcp"
# Create a public network, which generally matched to bridged network.
# Bridged networks make the machine appear as another physical device on
# your network.
# config.vm.network "public_network"
# Share an additional folder to the guest VM. The first argument is
# the path on the host to the actual folder. The second argument is
# the path on the guest to mount the folder. And the optional third
# argument is a set of non-required options.
#config.vm.synced_folder "data/", "/vagrant_data",owner: "neo4j", group: "neo4j"
config.ssh.insert_key = false
config.ssh.forward_x11 = true
# Provider-specific configuration so you can fine-tune various
# backing providers for Vagrant. These expose provider-specific options.
# Example for VirtualBox:
#
config.vm.provider "virtualbox" do |vb|
# # Display the VirtualBox GUI when booting the machine
#vb.gui = true
vb.name="ccle_real"
# # Customize the amount of memory on the VM:
vb.memory = "10240"
vb.cpus = 2
end
#
# View the documentation for the provider you are using for more
# information on available options.
# Define a Vagrant Push strategy for pushing to Atlas. Other push strategies
# such as FTP and Heroku are also available. See the documentation at
# https://docs.vagrantup.com/v2/push/atlas.html for more information.
# config.push.define "atlas" do |push|
# push.app = "YOUR_ATLAS_USERNAME/YOUR_APPLICATION_NAME"
# end
# Enable provisioning with a shell script. Additional provisioners such as
# Puppet, Chef, Ansible, Salt, and Docker are also available. Please see the
# documentation for more information about their specific syntax and use.
config.vm.provision "HitWalker2", type:"shell", inline: <<-SHELL
#this is only for a non-ssl version
sudo cp /vagrant/HitWalker2/hw2-nginx /etc/nginx/sites-available/
sudo ln -sf /etc/nginx/sites-available/hw2-nginx /etc/nginx/sites-enabled/default
cp -r /vagrant/HitWalker2 /home/vagrant/
sudo chown -R vagrant:vagrant /home/vagrant/HitWalker2
cd /vagrant/HitWalker2/populate
sudo ./roxygen_build.sh install
sudo chown -R vagrant:vagrant /var/www/
python /home/vagrant/HitWalker2/manage.py collectstatic --noinput
sudo chown -R vagrant:vagrant /var/www/
echo '
description "HitWalker2"
start on neo4j-started
stop on runlevel [016]
respawn
setuid vagrant
setgid vagrant
pre-start script
python /home/vagrant/HitWalker2/network/warm_up.py
end script
chdir /home/vagrant/HitWalker2/
exec gunicorn -k eventlet HitWalker2.wsgi:application
' > HitWalker2.conf
sudo cp HitWalker2.conf /etc/init/
rm HitWalker2.conf
##now neo4j
sudo service neo4j-service stop
sudo rm -rf /opt/neo4j-community-2.1.8/data
sudo tar -xvzf /vagrant/hitwalker2_base_data*
sudo mv hitwalker2_base_data /opt/neo4j-community-2.1.8/data
sudo chown -R vagrant:vagrant /opt/neo4j-community-2.1.8/
sudo service neo4j-service start
SHELL
config.vm.provision "markdown", type:"shell", inline: <<-SHELL
sudo Rscript -e 'source("http://bioconductor.org/biocLite.R")' -e 'biocLite("rmarkdown")'
wget https://github.com/jgm/pandoc/releases/download/1.15/pandoc-1.15-1-amd64.deb
sudo dpkg -i pandoc-1.15-1-amd64.deb
rm pandoc-1.15-1-amd64.deb
SHELL
config.vm.provision "pdf", type:"shell", inline: <<-SHELL
sudo apt-get install -y texlive-latex-recommended
sudo apt-get install -y texinfo
sudo apt-get install -y texlive-latex-extra
SHELL
config.vm.provision "patch", type:"shell", inline: <<-SHELL
cd /home/vagrant
rm -rf HitWalker2
cp -r /vagrant/HitWalker2 .
cd HitWalker2/populate
sudo ./roxygen_build.sh install
cd ..
python manage.py collectstatic --noinput
Rscript -e 'library(hwhelper)' -e 'load("/vagrant/hw2_config.RData")' -e 'configure(hw2.conf)'
cd /vagrant
sudo restart HitWalker2
sudo nginx -s reload
SHELL
end