NAMESPACE

# Generated by roxygen2: do not edit by hand

export(BangForBuck)
export(DataSummary)
export(PolyPhenFromMaf)
export(SaveToHTML)
export(abDrugOverlapAnalysis)
export(addCohortToIndividuals)
export(addPathwayImagesWithSelection)
export(addSequenceCaptureArm)
export(allInteractiveMainFunction)
export(armDescriptionList)
export(autoRunFromSettings)
export(compareSources)
export(correctByHgncHelper)
export(corsym)
export(extractPathNames)
export(getBasicSettings)
export(getDefaultPaths)
export(getDefaultSettings)
export(getGenesFromPaths)
export(getHugoSymbols)
export(getPaths)
export(getPathsWithGenes)
export(getReactomeBiopax)
export(getReactomeIds)
export(getStudyObject)
export(getTestPGM)
export(getTestPathSummaryRunner)
export(getTestStudyObject)
export(getTestStudySettings)
export(hypergeometricPathEnrichment)
export(initiateStudy)
export(list_to_table)
export(loadBasicArms)
export(loadDataArm)
export(makeDrugSelectionWorksheet)
export(openPGM)
export(patientSummaryToNozzleReport)
export(prepPathListForSave)
export(printProgramState)
export(runArm)
export(runDrugWorksheet)
export(runSomaticMutationsProcessing)
export(saveDataWorkUpNotes)
export(saveStudy)
export(selectAndLoadSettings)
export(setBorderColors)
export(setNodeColors)
export(settingList)
export(summaryTable)
exportClasses(DataArm)
exportClasses(PathSummaryRunner)
exportClasses(Path_Detail)
exportClasses(Study)
exportClasses(StudyMetaData)
import(AnnotationDbi)
import(HGNChelper)
import(RCurl)
import(VennDiagram)
import(biomaRt)
import(ggplot2)
import(graph)
import(graphite)
import(grid)
import(gridExtra)
import(hwriter)
import(methods)
import(shiny)
import(tcltk)
import(tools)
import(xtable)
importFrom(VennDiagram,venn.diagram)
importFrom(calibrate,textxy)