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<div class='biofold' ><span style="color:#c31e27;">Bio</span><span style="color:#4689a3;">molecules</span> <span style="color:#c31e27;">Fol</span><span style="color:#4689a3;">ding and </span><span style="color:#c31e27;">D</span><span style="color:#4689a3;">isease</span></div><br>
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<div class="text">
<h4 class="title" >Papers</h4>
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<div class="text">
<p class="text">
Since 2004 we have published 71 peer-reviewed manuscripts (13 reviews) in international journal with impact factor and 7 book chapters.
The complete list of research articles and book chapters is reported below.
<br><br>
<div class="text">
<h4 class="section">
2024
</h4></div>
<table cellpadding="7" cellspacing="7" class="paper">
<tbody><tr><td>
<ol>
<li class="text" value=71>
<p class='text-justify'>
<i>Zhang J, Kinch L, Katsonis P, Lichtarge O, Jagota M, Song YS, Sun Y, Shen Y, Kuru N, Dereli O, Adebali O, Alladin MA, Pal D, <b>Capriotti E</b>, Turina MP, Savojardo C, Martelli PL, Babbi G, Casadio R, Hu Z, Pucci F, Rooman M, Cia G, Tsishyn M, Strokach A, van Loggerenberg W, Roth FP, Radivojac P, Brenner SE, Cong Q, Grishin NV.</i> (2024).
Assessing predictions on fitness effects of missense variants in HMBS in CAGI6.
<b>Human Genetics</b>. DOI:10.1007/s00439-024-02680-3 <br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/39110250"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/zhang-huge2024.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1007/s00439-024-02680-3" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1007/s00439-024-02680-3" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
<li class="text" value=70>
<p class='text-justify'>
<i>Critical Assessment of Genome Interpretation Consortium</i>. (2024).
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods.
<b>Genome Biology</b>. 17:95. DOI:10.1186/s40246-023-00544-x.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/38389099"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/cagi-genbiol-2024.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1186/s13059-023-03113-6" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1186/s13059-023-03113-6" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
</ol>
</td></tr></tbody></table>
<h4 class="section">
2023
</h4></div>
<table cellpadding="7" cellspacing="7" class="paper">
<tbody><tr><td>
<ol>
<li class="text" value=69>
<p class='text-justify'>
<i>Petrosino M, Novak L, Pasquo A, Turina P, <span style="font-weight:500;">Capriotti E</span>, Minicozzi V, Consalvi V, Chiaraluce R</i>. (2023).
The complex impact of cancer-related missense mutations on the stability and on the biophysical and biochemical properties of MAPK1 and MAPK3 somatic variants.
<b>Human Genomics</b>. 17:95. DOI:10.1186/s40246-023-00544-x.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/37891694"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/petrosino-hgenomics-2023.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/petrosino-hgenomics-2023-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1186/s40246-023-00544-x" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1186/s40246-023-00544-x" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
<li class="text" value=68>
<p class='text-justify'>
<i>Turina P, Fariselli P, <span style="font-weight:500;">Capriotti E*</span></i>. (2023).
K-Pro: Kinetics data on proteins and mutants.
<b>Journal of Molecular Biology</b>. 435:168245. DOI:10.1016/j.jmb.2023.168245.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/37625584"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/turina_jmb2023.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/turina-jmb2023-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<a target=blank href="https://folding.biofold.org/k-pro"><img width="18" src="pages/img/webserver.jpg"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1016/j.jmb.2023.168245" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1016/j.jmb.2023.168245" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
<li class="text" value=67>
<p class='text-justify'>
<i>Rocha J*, Sastre S, Amengual-Cladera E, Hernandez-Rodriguez J, Asensio-Landa V, Heine-Suner D,
<span style="font-weight:500;">Capriotti E</span></i>. (2023).
Identification of driver epistatic gene pairs combining germline and somatic mutations in cancer.
<b>International Journal of Molecular Sciences</b>. 24(11):9323. DOI: 10.3390/ijms24119323.
<br>
<a target=blank href="https://pubmed.ncbi.nlm.nih.gov/37298272"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/rocha-ijms2023.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/rocha-ijms2023-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<a href="pages/documents/papers/rocha-ijms2023-files.gz">
<img width="15" src="pages/img/zip.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.3390/ijms24119323" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.3390/ijms24119323" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
<li class="text" value=66>
<i><span style="font-weight:500;">Capriotti E*</span>, Fariselli P*.</i> (2023).
PhD-SNP<sup>g</sup>: updating a webserver and lightweight tool for scoring nucleotide variants.
<b>Nucleic Acids Research.</b> DOI:10.1093/nar/gkad455.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/37246737">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/capriotti-nar2023.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/capriotti-nar2023-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<a href="pages/documents/papers/capriotti-nar2023-datasets.tar.gz">
<img width="15" src="pages/img/zip.gif"></a>
<a target=blank href="https://snps.biofold.org/phd-snpg"><img width="18" src="pages/img/webserver.jpg"></a>
<a target=blank href="https://github.com/biofold/PhD-SNPg"><img width="20" src="pages/img/github.png"></a>
<a target=blank href="https://hub.docker.com/r/biofold/phd-snpg"><img width="24" src="pages/img/docker.png"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/nar/gkad455" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/nar/gkad455" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
<li class="text" value=65>
<p class='text-justify'>
<i>
Licata L, Via A, Turina P, Babbi G, Benevenuta S, Carta C,
Casadio R, Cicconardi A, Facchiano A, Fariselli P, Giordano D, Isidori F,
Marabotti A, Martelli PL, Pascarella S, Pinelli M, Pippucci T, Russo R, Savojardo C,
Scafuri B, Valeriani L, <span style="font-weight:500;">Capriotti E* </span></i> (2023).
Resources and tools for rare disease variant interpretation.
<b>Frontiers in Molecular Biosciences</b>. 10:1169109. DOI:10.3389/fmolb.2023.1169109.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/37234922"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/licata_fmb2023.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/licata_fmb2023_files.zip">
<img width="15" src="pages/img/zip.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.3389/fmolb.2023.1169109" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.3389/fmolb.2023.1169109" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
<li class="text" value=64>
<p class='text-justify'>
<i>Benevenuta S, Birolo G, Sanavia T, <span style="font-weight:500;">Capriotti E</span>, Fariselli P</i> (2023).
Challenges in predicting stabilizing variations: An exploration.
<b>Frontiers in Molecular Biosciences</b>. 9:1075570. DOI:10.3389/fmolb.2022.1075570.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/36685278"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/benevenuta_fmb2023.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.3389/fmolb.2022.1075570" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.3389/fmolb.2022.1075570" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
</ol>
</td></tr></tbody></table>
<div class="text">
<h4 class="section">
2022
</h4></div>
<table cellpadding="7" cellspacing="7" class="paper">
<tbody><tr><td>
<ol>
<li class="text" value=63>
<p class='text-justify'>
<i>Montanucci L<sup>†</sup>, <span style="font-weight:500;">Capriotti E<sup>†</sup></span>, Birolo G, Benevenuta S, Pancotti C, Lal D, Fariselli P</i> (2022).
DDGun: an untrained predictor of protein stability changes upon amino acid variants.
<b>Nucleic Acids Research</b>. DOI:10.1093/nar/gkac325.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/35524565"><img src="pages/img/pubmed.gif"></a>
<a href="https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkac325/43614328/gkac325.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/gkac325-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<a href="pages/documents/papers/ddgun-preds.tar.gz">
<img width="15" src="pages/img/zip.gif"></a>
<a target=blank href="https://folding.biofold.org/ddgun"><img width="16" src="pages/img/webserver.jpg"></a>
<a target=blank href="https://github.com/biofold/ddgun"><img width="20" src="pages/img/github.png"></a>
<a target=blank href="https://hub.docker.com/r/biofold/ddgun"><img width="24" src="pages/img/docker.png"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/nar/gkac325" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/nar/gkac325" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
<li class="text" value=62>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E*</span>, Fariselli P*</i> (2022).
Evaluating the relevance of sequence conservation in the prediction of pathogenic missense variants.
<b>Human Genetics</b>.141:1649-1658. DOI:10.1007/s00439-021-02419-4.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/35098354"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/capriotti-huge2022.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/capriotti-huge2022-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1007/s00439-021-02419-4" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1007/s00439-021-02419-4" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
<li class="text" value=61>
<p class='text-justify'>
<i>Pancotti C, Benevenuta S, Birolo G, Repetto V, Alberini V, Sanavia T, <span style="font-weight:500;">Capriotti E*</span>, Fariselli P* </i> (2022).
Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset.
<b>Briefings in Bioinformatics</b>. DOI:10.1093/bib/bbab555<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/35021190"><img src="pages/img/pubmed.gif"></a>
<a href="https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbab555/42128432/bbab555.pdf?guestAccessKey=a54dbef8-b7d0-495f-965a-1d315c4f0055"><img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/bib/bbab555" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/bib/bbab555" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
</ol>
</td></tr></tbody></table>
<div class="text">
<h4 class="section">
2021
</h4></div>
<table cellpadding="7" cellspacing="7" class="paper">
<tbody><tr><td>
<ol>
<li class="text" value=60>
<p class='text-justify'>
<i>
Walsh I, Fishman D, Garcia-Gasulla D, Titma T, Pollastri G,<span style="font-weight:500;"> Capriotti E</span> ,
Casadio R, Capella-Gutierrez S,
Cirillo D, Del Conte A, Dimopoulos AC, Del Angel V. D, Dopazo J, Fariselli P, Fernandez J. M, Huber F,
Kreshuk A, Lenaerts T, Martelli PL, Navarro A, Broin PO, Pinero J, Piovesan D, Reczko M, Ronzano F,
Satagopam V, Savojardo C, Spiwok V, Tangaro MA, Tartari G, Salgado D, Valencia A, Zambelli F, Harrow J,
Psomopoulos FE, Tosatto SCE.
</i> (2021).
DOME: recommendations for supervised machine learning validation in biology.
<b>Nature Methods</b>. DOI:10.1038/s41592-021-01205-4.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/34316068"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/walsh_nmeth2021.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1038/s41592-021-01205-4" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1038/s41592-021-01205-4" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
<li class="text" value=59>
<p class='text-justify'>
<i>Merlotti A, Menichetti G, Fariselli P, <span style="font-weight:500;">Capriotti E</span>, Remondini D.</i> (2021).
Network-based strategies for protein characterization.
<b>Advances in Protein Chemistry and Structural Biology</b>. 127: 217-248. DOI:10.1016/bs.apcsb.2021.05.001.
<br><a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/34340768"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/merlotti-apcsb2021.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1016/bs.apcsb.2021.05.001" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1016/bs.apcsb.2021.05.001" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
<li class="text" value=58>
<p class='text-justify'>
<i> Pancotti C, Benevenuta S, Repetto V, Birolo G, <span style="font-weight:500;">Capriotti E</span>, Sanavia T, Fariselli P.</i> (2021).
A deep-learning sequence-based method to predict protein stability changes upon genetic variations.
<b>Genes</b>. 12:911. DOI:10.3390/genes12060911.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/34204764"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/pancotti-genes2021.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.3390/genes12060911" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.3390/genes12060911" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
<li class="text" value=57>
<p class='text-justify'>
<i> Petrosino M, Novak L, Pasquo A, Chiaraluce R, Turina P, <span style="font-weight:500;">Capriotti E*</span>, Consalvi V*.</i> (2021).
Analysis and interpretation of the impact of missense variants in cancer.
<b>International Journal of Molecular Sciences</b>. 22:5416. DOI:10.3390/ijms22115416.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/34063805"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/petrosino-ijms2021.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/petrosino-ijms2021-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<a href="pages/documents/papers/supplementary_file1.tsv.gz">
<img width="15" src="pages/img/zip.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.3390/ijms22115416" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.3390/ijms22115416" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
<li class="text" value=56>
<p class='text-justify'>
<i>Turina P, Fariselli P*, <span style="font-weight:500;">Capriotti E*</span></i>. (2021).
ThermoScan: Semi-automatic identification of protein stability data from PubMed.
<b>Frontiers in Molecular Biosciences</b>.8:620475. DOI:10.3389/fmolb.2021.620475.
<br>
<a target=blank href="https://pubmed.ncbi.nlm.nih.gov/33842537"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/turina_fmbs2021.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/turina_fmbs2021_supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<a href="pages/documents/papers/thermoscan-supfiles.tar.gz">
<img width="15" src="pages/img/zip.gif"></a>
<a target=blank href="https://folding.biofold.org/thermoscan"><img width="18" src="pages/img/webserver.jpg"></a>
<a target=blank href="https://github.com/biofold/ThermoScan"><img width="20" src="pages/img/github.png"></a>
<span class="__dimensions_badge_embed__" data-doi="10.3389/fmolb.2021.620475" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.3389/fmolb.2021.620475" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
<li class="text" value=55>
<p class='text-justify'>
<i>Birolo G, Benevenuta S, Fariselli P*, <span style="font-weight:500;">Capriotti E*</span>,
Giorgio E, Sanavia T</i>. (2021).
Protein stability perturbation contributes to the loss of function in haploinsufficient genes.
<b>Frontiers in Molecular Biosciences</b>. 8:620793. DOI:10.3389/fmolb.2021.620793.
<br>
<a target=blank href="https://pubmed.ncbi.nlm.nih.gov/33598480"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/birolo_fmolb2021.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/">
<img width="15" src="pages/img/doc.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.3389/fmolb.2021.620793" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.3389/fmolb.2021.620793" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
<li class="text" value=54>
<p class='text-justify'>
<i>Benevenuta S, <span style="font-weight:500;">Capriotti E*</span>, Fariselli P*</i>. (2021).
Calibrating variant-scoring methods for clinical decision making.
<b>Bioinformatics</b>. 36:5709-5711.
<br>
<a target=blank href="https://pubmed.ncbi.nlm.nih.gov/33492342"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/benevenuta-bioinfo2020.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/benevenuta-bioinfo2020-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/bioinformatics/btaa943" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/bioinformatics/btaa943" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
</ol>
</td></tr></tbody></table>
<div class="text">
<h4 class="section">
2020
</h4></div>
<table cellpadding="7" cellspacing="7" class="paper">
<tbody><tr><td>
<ol>
<li class="text" value=53>
<p class='text-justify'>
<i>Sanavia T, Birolo G, Montanucci L, Turina P, <span style="font-weight:500;">Capriotti E*</span>, Fariselli P*</i>. (2020).
Limitations and challenges in protein stability prediction upon genome varia‐tions: towards future applications in precision medicine.
<b>Computational and Structural Biotechnology Journal</b>. 18: 1968-1079.
<br>
<a target=blank href="https://pubmed.ncbi.nlm.nih.gov/32774791/"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/sanavia_csbj2020.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1016/j.csbj.2020.07.011" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1016/j.csbj.2020.07.011" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
</ol>
</td></tr></tbody></table>
<div class="text">
<h4 class="section">
2019
</h4></div>
<table cellpadding="7" cellspacing="7" class="paper">
<tbody><tr><td>
<ol>
<li class="text" value=52>
<p class='text-justify'>
<i>Kasak L, Bakolitsa C, Hu Z, Yu C, Rine J, Dimster-Denk DF, Pandey G, De Baets G, Bromberg Y, Cao C, <span style="font-weight:500;">Capriotti E</span>,
Casadio R, Van Durme J, Giollo M, Karchin R,
Katsonis P, Leonardi E, Lichtarge O, Martelli PL, Masica D, Mooney SD, Olatubosun A,
Pal LR, Radivojac P, Rousseau F, Savojardo C, Schymkowitz J, Thusberg J,
Tosatto SCE, Vihinen M, Väliaho J, Repo S, Moult J, Brenner SE, Friedberg I.</i> (2019).
Assessing Computational Predictions of the Phenotypic Effect of
Cystathionine-beta-Synthase Variants.
<b>Human Mutation</b>. 40: 1530-1545.
<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/31301157"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Kasak_et_al-2019-Human_Mutation.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1002/humu.23868" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1002/humu.23868" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=51>
<p class='text-justify'>
<i>Zhang J, Kinch LN, Cong Q, Katsonis P, Lichtarge O, Savojardo C, Babbi G, Martelli PL,
<span style="font-weight:500;">Capriotti E</span>,
Casadio R, Garg A, Pal D, Weile J, Sun S, Verby M, Roth FP, Grishin NV. </i> (2019)
Assessing predictions on fitness effects of missense variants in calmodulin.
<b>Human Mutation</b>. 40: 1463-1473.
<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/31283071"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Zhang_et_al-2019-Human_Mutation.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1002/humu.23857" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1002/humu.23857" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=50>
<p class='text-justify'>
<i>Monzon AM, Carraro M, Chiricosta L, Reggian F, Han J, Ozturk K, Wang Y, Miller M, Bromberg Y,
<span style="font-weight:500;">Capriotti E</span>,
Savojardo C, Babbi G, Martelli PL, Casadio R, Katsonis P, Lichtarge O, Carter H,
Kousi M, Katsanis N, Andreoletti G, Moult J, Brenner SE, Ferrari C, Leonardi E, Tosatto SCE. </i>
(2019). Performance of computational methods for the evaluation of Pericentriolar Material 1
missense variants in CAGI-5.
<b>Human Mutation</b>. 40: 1474-1485.
<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/31260570"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Monzon_et_al-2019-Human_Mutation.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1002/humu.23856" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1002/humu.23856" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=49>
<p class='text-justify'>
<i>Voskanian A, Katsonis P, Lichtarge O, Pejaver V, Radivojac P, Mooney SD,
<span style="font-weight:500;">Capriotti E</span>,
Bromberg Y, Wang Y, Miller M, Martelli PL, Savojardo C, Babbi G, Casadio R, Cao Y, Sun Y, Shen Y, Garg A, Pal D, Yu Y, Huff CD,
Tavtigian SV, Young E, Neuhausen SL, Ziv E, Pal LR, Andreoletti G, Brenner S, Moult J, Kann MG.</i> (2019).
Assessing the performance of in-silico methods for predicting the pathogenicity of variants in the gene CHEK2,
among Hispanic females with breast cancer.
<b>Human Mutation</b>. 40: 1612-1622.
<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/31241222"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Voskanian_et_al-2019-Human_Mutation.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1002/humu.23849" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1002/humu.23849" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=48>
<p class='text-justify'>
<i> Savojardo C<sup>†</sup>, Petrosino M<sup>†</sup>, Babbi G, Bovo S, Corbi-Verge C, Casadio R, Piero Fariselli P,
Folkman L, Garg A, Karimi M, Katsonis P, Kim PM, Lichtarge O, Martelli PL, Pasquo A, Pal D,
Shen Y, Strokach AV, Turina P, Zhou Y, Andreoletti G, Brenner S, Chiaraluce R, Consalvi V,
<span style="font-weight:500;">Capriotti E*.</span></i> (2019).
Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge.
<b>Human Mutation</b>. 40: 1392-1399.
<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/31209948"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Savojardo-Petrosino_et_al-2019-Human_Mutation.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/Savojardo-Petrosino_et_al-2019-Human_Mutation-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1002/humu.23843" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1002/humu.23843" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=47>
<p class='text-justify'>
<i>Montanucci L, <span style="font-weight:500;">Capriotti E*</span>, Frank Y, Ben-Tal N, Fariselli P*.</i> (2019).
DDGun: an untrained method for the prediction of protein stability changes upon single and multiple point variations.
<b>BMC Bioinformatics</b>. 20 (Suppl 14): 335.
<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/31266447"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Montanucci_et_al-2019-BMC_Bioinformatics.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="http://folding.biofold.org/ddgun">
<img width="15" src="pages/img/zip.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1186/s12859-019-2923-1" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1186/s12859-019-2923-1" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=46>
<p class='text-justify'>
<i>McInnes G, Daneshjou R, Katsonis P, Lichtarge O, Srinivasan RG, Rana S, Radivojac P, Mooney SD, Pagel KA, Stamboulian M, Jiang Y, <span style="font-weight:500;">Capriotti E</span>, Wang Y, Bromberg Y, Bovo S, Savojardo C, Martelli PL, Casadio R, Pal LR, Moult J, Brenner S, Altman R. </i> (2019).
Predicting venous thromboembolism risk from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges.
<b>Human Mutation</b>. 40: 1314-1320.
<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/31140652"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/McInness_HumanMutation2019.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/McInness_HumanMutation2019-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1002/humu.23825" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1002/humu.23825" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=45>
<p class='text-justify'>
<i>
Petrosino M, Pasquo A, Novak L, Toto A, Gianni S, Mantuano E, Veneziano L, Minicozzi V, Pastore A, Puglisi R,
<span style="font-weight:500;">Capriotti E</span>, Chiaraluce R, Consalvi V. </i> (2019).
Characterization of human frataxin missense variants in cancer tissues.
<b>Human Mutation</b>. 40: 1400-1413.
<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/31074541"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Petrosino_et_al-2019-Human_Mutation.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/Petrosino_et_al-2019-Human_Mutation-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1002/humu.23789" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1002/humu.23789" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=44>
<p class='text-justify'>
<i>Savojardo C, Babbi G, Bovo S, <span style="font-weight:500;">Capriotti E</span>, Martelli PL, Casadio R.</i> (2019).
Are machine learning based methods suited to address complex biological problems? Lessons from CAGI‐5 challenges
<b>Human Mutation</b>. 40: 1455-1462
<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/31066146"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Savojardo_et_al-2019-Human_Mutation.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/Savojardo_et_al-2019-Human_Mutation-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1002/humu.23784" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1002/humu.23784" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=43>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E<sup>†</sup>*</span>, Montanucci L<sup>†</sup>, Profiti G, Rossi I, Giannuzzi D, Aresu L, Fariselli P.</i> (2019).
Fido-SNP: The first webserver for scoring the impact of single nucleotide variants in the dog genome.
<b>Nucleic Acids Research</b>. 47(W1): W136-W141.
<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/31114899"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/gkz420.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/gkz420-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<a href="pages/documents/papers/fido-snp-supfiles.tar.gz">
<img width="15" src="pages/img/zip.gif"></a>
<a target=blank href="https://snps.biofold.org/fido-snp"><img width="18" src="pages/img/webserver.jpg"></a>
<a target=blank href="https://github.com/biofold/Fido-SNP"><img width="20" src="pages/img/github.png"></a>
<a target=blank href="https://hub.docker.com/r/biofold/fido-snp"><img width="24" src="pages/img/docker.png"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/nar/gkz420" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/nar/gkz420" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=42>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E*</span>, Ozturk K, Carter H*.</i> (2019).
Integrating molecular network with genetic variant interpretation for precision medicine.
<b>WIREs Systems Biology and Medicine.</b>
11: e1443.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/30548534"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/capriotti_wsbm2018.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1002/wsbm.1443" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1002/wsbm.1443" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
</ol>
</td></tr></tbody></table>
<div class="text">
<h4 class="section">
2017
</h4></div>
<table cellpadding="7" cellspacing="7" class="paper">
<tbody><tr><td>
<ol>
<li class="text" value=41>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E*</span>, Fariselli P*.</i> (2017).
PhD-SNP<sup>g</sup>: A webserver and lightweight tool for scoring single nucleotide variants.
<b>Nucleic Acids Research.</b> 45: W247-W252.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/28482034">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/phdsnpg-web-2017.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/phdsnpg-web-2017-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<a href="pages/documents/papers/phdsnpg-web-2017-supfiles.gz">
<img width="15" src="pages/img/zip.gif"></a>
<a target=blank href="https://snps.biofold.org/phd-snpg"><img width="18" src="pages/img/webserver.jpg"></a>
<a target=blank href="https://github.com/biofold/PhD-SNPg"><img width="20" src="pages/img/github.png"></a>
<a target=blank href="https://hub.docker.com/r/biofold/phd-snpg"><img width="24" src="pages/img/docker.png"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/nar/gkx369" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/nar/gkx369" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=40>
<p class='text-justify'>
<i>Carraro M, Minervini G, Giollo M, Bromberg Y, <span style="font-weight:500;">Capriotti E</span>, Casadio R, Dunbrack R, Elefanti L,
Fariselli P, Ferrari C, Gough J, Katsonis P, Leonardi E, Lichtarge O, Menin C, Martelli PL, Niroula A,
Pal LR, Repo S, Scaini MC, Vihinen M, Wei Q, Xu Q, Yang Y, Yin Y, Zaucha J, Zhao H, Zhou Y, Brenner SE,
Moult J, Tosatto SCE.</i> (2017).
Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI.
<b>Human Mutation.</b> 38: 1042-1050.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/28440912"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Carraro_HumMut2017.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/Carraro_HumMut2017_SupMat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1002/humu.23235" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1002/humu.23235" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=39>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E*</span>, Martelli PL, Fariselli P, Casadio R.</i> (2017).
Blind prediction of deleterious amino acid variations with SNPs&GO.
<b>Human Mutation.</b> 38: 1064-1071.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/28102005"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Capriotti_HumMut2017.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/Capriotti_HumMut2017_SupMat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1002/humu.23179" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1002/humu.23179" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br></ol>
</td></tr></tbody></table>
<div class="text">
<h4 class="section">
2016
</h4></div>
<table cellpadding="7" cellspacing="7" class="paper">
<tbody><tr><td>
<ol>
<li class="text" value=38>
<p class='text-justify'>
<i>Khass M, Blackburn T, Burrows PD, Walter MR, <span style="font-weight:500;">Capriotti E</span>, Schroeder HW Jr.</i> (2016).
VpreB serves as an invariant surrogate antigen for selecting immunoglobulin antigen-binding sites. <b>Science Immunology.</b>
1: aaf6628.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/28217764"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/khass_scienceimmunology2016.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1126/sciimmunol.aaf6628" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1126/sciimmunol.aaf6628" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br></ol>
</td></tr></tbody></table>
<div class="text">
<h4 class="section">
2015
</h4></div>
<table cellpadding="7" cellspacing="7" class="paper">
<tbody><tr><td>
<ol>
<li class="text" value=37>
<p class='text-justify'>
<i> Tian R, Basu MK, <span style="font-weight:500;">Capriotti E*</span>.</i> (2015).
Computational methods and resources for the interpretation of genomic variants in cancer.
<b>BMC Genomics.</b> 16 (Suppl. 8): S7.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/26111056"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Tian_BMCGenomics2015.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/Tian_BMCGenomics2015-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1186/1471-2164-16-S8-S7" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1186/1471-2164-16-S8-S7" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=36>
<p class='text-justify'>
<i>Beerten J, Van Durme J, Gallardo R, <span style="font-weight:500;">Capriotti E</span>, Serpell L, Rousseau F, Schymkowitz J.</i> (2015).
WALTZ-DB: a benchmark database of amyloidogenic hexapeptides.
<b>Bioinformatics.</b> 31:1698-1700.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/25600945"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Beerten_Bioinformatics2015.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/bioinformatics/btv027" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/bioinformatics/btv027" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br></ol>
</td></tr></tbody></table>
<div class="text">
<h4 class="section">
2014
</h4></div>
<table cellpadding="7" cellspacing="7" class="paper">
<tbody><tr><td>
<ol>
<li class="text" value=35>
<p class='text-justify'>
<i> Tian R, Basu MK, <span style="font-weight:500;">Capriotti E*</span>.</i> (2014).
ContrastRank: a new method for ranking putative cancer driver genes and classification of tumor samples.
<b>Bioinformatics.</b> 30: i572-i578.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/25161249"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Tian_Bioinformatics2014.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/Tian_Bioinformatics2014_SupMat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<a target=blank href="https://snps.biofold.org/contrastrank"><img width="18" src="pages/img/webserver.jpg"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/bioinformatics/btu466" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/bioinformatics/btu466" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=34>
<p class='text-justify'>
<i> Di Tommaso P, Bussotti G, Kemena C, <span style="font-weight:500;">Capriotti E</span>, Chatzou M, Prieto Barja P, Notredame C.</i> (2014).
SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments.
<b>Nucleic Acids Research.</b> 42: W356-360<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/24972831"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/DiTommaso_NAR2014.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a target=blank href="https://tcoffee.crg.eu/apps/tcoffee/do:saracoffee"><img width="18" src="pages/img/webserver.jpg"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/nar/gku459" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/nar/gku459" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=33>
<p class='text-justify'>
<i> Li B, Seligman C, Thusberg J, Miller JL, Auer J, Whirl-Carrillo M, <span style="font-weight:500;">Capriotti E</span>, Klein TE, Mooney SD.</i> (2014).
In silico comparative characterization of pharmacogenomic missense variants.
<b>BMC Genomics.</b> 15 (Suppl. 4): S4.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/25057096"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Li_BMCGenomics2014.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1186/1471-2164-15-S4-S4" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1186/1471-2164-15-S4-S4" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br></ol>
</td></tr></tbody></table>
<div class="text">
<h4 class="section">
2013
</h4></div>
<table cellpadding="7" cellspacing="7" class="paper">
<tbody><tr><td>
<ol>
<li class="text" value=32>
<p class='text-justify'>
<i>Compiani M<sup>†</sup>*, <span style="font-weight:500;">Capriotti E<sup>†</sup>*</span>.</i> (2013).
Computational and theoretical methods for protein folding.
<b>Biochemistry.</b> 52: 8601-8624.<br>
<a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/24187909"><img src="pages/img/pubmed.gif" /></a>
<a href="pages/documents/papers/Compiani_Biochemistry2013.pdf"><img width="15" src="pages/img/pdf.gif" /></a>
<span class="__dimensions_badge_embed__" data-doi="10.1021/bi4001529" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1021/bi4001529" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=31>
<p class='text-justify'>
<i>Norambuena T, Cares JF, <span style="font-weight:500;">Capriotti E</span>, Melo F</i> (2013).
WebRASP: a server for computing energy scores to assess
the accuracy and stability of RNA 3D structures.
<b>Bioinformatics.</b> 29:2649-2650.<br>
<a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/23929030"><img src="pages/img/pubmed.gif" /></a>
<a href="pages/documents/papers/Norambuena_Bioinformatics2013.pdf"><img width="15" src="pages/img/pdf.gif" /></a>
<a target=blank href="http://melolab.org/webrasp"><img width="18" src="pages/img/webserver.jpg"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/bioinformatics/btt441" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/bioinformatics/btt441" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=30>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E*</span>, Calabrese R, Fariselli P, Martelli PL, Altman RB,
Casadio R*</i> (2013).
WS-SNPs&GO: a web server for predicting the deleterious effect of
human protein variants using functional annotation.
<b>BMC Genomics.</b> 14 Suppl 3:S6.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/23819482">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Capriotti_SNPsGO_BMCGenomics13.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<a target=blank href="https://snps.biofold.org/snps-and-go"><img width="18" src="pages/img/webserver.jpg"></a>
<a target=blank href="https://hub.docker.com/r/biofold/snps-and-go"><img width="24" src="pages/img/docker.png"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1186/1471-2164-14-S3-S6" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1186/1471-2164-14-S3-S6" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=29>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E*</span>, Altman RB, Bromberg Y*</i> (2013).
Collective judgment predicts disease-associated single nucleotide variants.
<b>BMC Genomics.</b> 14 Suppl 3:S2.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/23819846">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Capriotti_MetaSNP_BMCGenomics13.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/Capriotti_MetaSNP_BMCGenomics13-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<a target=blank href="https://snps.biofold.org/meta-snp"><img width="18" src="pages/img/webserver.jpg"></a>
<a target=blank href="https://hub.docker.com/r/biofold/meta-snp"><img width="24" src="pages/img/docker.png"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1186/1471-2164-14-S3-S2" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1186/1471-2164-14-S3-S2" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text" value=28>
<p class='text-justify'>
<i> Kemena C, Bussotti G, <span style="font-weight:500;">Capriotti E</span>, Marti-Renom MA, Notredame C.</i> (2013).
Using tertiary structure for the computation of highly accurate multiple RNA alignments with the
SARA-Coffee package.
<b>Bioinformatics.</b> 29:1112-1119.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/23449094">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Kemena_Bioinformatics2013.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/Kemena_Bioinformatics2013-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/bioinformatics/btt096" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/bioinformatics/btt096" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
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<h4 class="section">
2012
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<li class="text" value=27>
<p class='text-justify'>
<i> Lahti JL, Tang GW, <span style="font-weight:500;">Capriotti E</span>, Liu T, Altman RB.</i> (2012).
Bioinformatics and variability in drug response: a protein structural perspective.
<b>J R Soc Interface.</b> 9; 1409-1437.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/22552919">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Lahti_JRSI2012.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1098/rsif.2011.0843" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1098/rsif.2011.0843" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
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<li class="text" value=26>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E<sup>†</sup>*</span>, Nehrt NL<sup>†</sup>, Kann MG<sup>†</sup>*, Bromberg Y<sup>†</sup>*.</i> (2012).
Bioinformatics for personal genome interpretation.
<b>Briefings in Bioinformatics</b>. 13; 495-512.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/22247263">
<img src="pages/img/pubmed.gif"></a>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3404395/pdf/bbr070.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/bib/bbr070" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/bib/bbr070" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
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<h4 class="section">
2011
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<li class="text" value=25>
<p class='text-justify'>
<i> Dewey FE, Chen R, Cordero SP, Ormond KE, Caleshu C, Karczewski KJ,
Whirl-Carrillo M, Wheeler MT, Dudley JT, Byrnes JK, Cornejo OE,
Knowles JW, Woon M, Sangkuhl K, Gong L, Thorn CF, Hebert JM,
<span style="font-weight:500;">Capriotti E</span>, David SP, Pavlovic A, West A, Thakuria JV, Ball MP,
Zaranek AW, Rehm HL, Church GM, West JS, Bustamante CD, Snyder M,
Altman RB, Klein TE, Butte AJ, Ashley EA.</i> (2011).
Phased whole-genome genetic risk in a family quartet using a major
allele reference sequence.
<b>PLOS Genetics.</b> 7; e1002280.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/21935354">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Dewey_PLOSGenetics2011.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1371/journal.pgen.1002280" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1371/journal.pgen.1002280" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
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<li class="text" value=24>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E*</span>, Altman RB.</i> (2011).
A new disease-specific machine learning approach for the prediction
of cancer-causing missense variants.
<b>Genomics.</b> 98; 310-317.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/21763417">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Capriotti_Genomics2011.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/Capriotti_Genomics2011-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<a target=blank href="https://snps.biofold.org/drcancer"><img width="18" src="pages/img/webserver.jpg"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1016/j.ygeno.2011.06.010" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1016/j.ygeno.2011.06.010" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
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<li class="text" value=23>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E*</span>, Altman RB.</i> (2011).
Improving the prediction of disease-related variants using protein
three-dimensional structure.
<b>BMC Bioinformatics.</b> 12 (Suppl 4); S3<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/21992054">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Capriotti_AIMM_BMCBioinformatics2011.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1186/1471-2105-12-S4-S3" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1186/1471-2105-12-S4-S3" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
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