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<!DOCTYPE html>
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<div class='biofold' ><span style="color:#c31e27;">Bio</span><span style="color:#4689a3;">molecules</span> <span style="color:#c31e27;">Fol</span><span style="color:#4689a3;">ding and </span><span style="color:#c31e27;">D</span><span style="color:#4689a3;">isease</span></div><br>
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<div class="text">
<h4 class="title" >Selected papers</h4>
</div>
<div class="text">
<p class="text">
Since 2004 we have published 71 peer-reviewed manuscripts (13 reviews) in international journal with impact factor and 7 book chapters.
A selected list of papers grouped by topics are reported below.
The <a href="all_papers.html">full list</a>
of research articles, reviews and book chapters is available at this
<a href="all_papers.html">webpage</a>.
<br><br>
<div class="text">
<h4 class="section">
<h4 class="section">
Genomic variations and disease
</h4></div>
<table cellpadding="7" cellspacing="7" class="paper">
<tbody><tr><td>
<ul>
<li class="text" value=43>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E<sup>†</sup>*</span>, Montanucci L<sup>†</sup>, Profiti G, Rossi I, Giannuzzi D, Aresu L, Fariselli P*.</i> (2019).
Fido-SNP: The first webserver for scoring the impact of single nucleotide variants in the dog genome.
<b>Nucleic Acids Research</b>. 47(W1): W136-W141.
<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/31114899"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/gkz420.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/gkz420-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<a href="pages/documents/papers/fido-snp-supfiles.tar.gz">
<img width="15" src="pages/img/zip.gif"></a>
<a target=blank href="https://snps.biofold.org/fido-snp"><img width="18" src="pages/img/webserver.jpg"></a>
<a target=blank href="https://github.com/biofold/Fido-SNP"><img width="20" src="pages/img/github.png"></a>
<a target=blank href="https://hub.docker.com/r/biofold/fido-snp"><img width="24" src="pages/img/docker.png"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/nar/gkz420" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/nar/gkz420" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=41>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E*</span>, Fariselli P*.</i> (2017).
PhD-SNP<sup>g</sup>: A webserver and lightweight tool for scoring single nucleotide variants.
<b>Nucleic Acids Research.</b> 45: W247-W252.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/28482034">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/phdsnpg-web-2017.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/phdsnpg-web-2017-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<a href="pages/documents/papers/phdsnpg-web-2017-supfiles.gz">
<img width="15" src="pages/img/zip.gif"></a>
<a target=blank href="https://snps.biofold.org/phd-snpg"><img width="18" src="pages/img/webserver.jpg"></a>
<a target=blank href="https://github.com/biofold/PhD-SNPg"><img width="20" src="pages/img/github.png"></a>
<a target=blank href="https://hub.docker.com/r/biofold/phd-snpg"><img width="24" src="pages/img/docker.png"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/nar/gkx369" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/nar/gkx369" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=35>
<p class='text-justify'>
<i> Tian R, Basu MK, <span style="font-weight:500;">Capriotti E*</span>.</i> (2014).
ContrastRank: a new method for ranking putative cancer driver genes and classification of tumor samples.
<b>Bioinformatics.</b> 30: i572-i578.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/25161249"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Tian_Bioinformatics2014.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/Tian_Bioinformatics2014_SupMat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<a target=blank href="https://snps.biofold.org/contrastrank"><img width="18" src="pages/img/webserver.jpg"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/bioinformatics/btu466" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/bioinformatics/btu466" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=29>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E*</span>, Altman RB, Bromberg Y*</i> (2013).
Collective judgment predicts disease-associated single nucleotide variants.
<b>BMC Genomics.</b> 14 Suppl 3:S2.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/23819846">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Capriotti_MetaSNP_BMCGenomics13.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/Capriotti_MetaSNP_BMCGenomics13-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<a target=blank href="https://snps.biofold.org/meta-snp"><img width="18" src="pages/img/webserver.jpg"></a>
<a target=blank href="https://hub.docker.com/r/biofold/meta-snp"><img width="24" src="pages/img/docker.png"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1186/1471-2164-14-S3-S2" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1186/1471-2164-14-S3-S2" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=17>
<p class='text-justify'>
<i>Calabrese R, <span style="font-weight:500;">Capriotti E</span>, Fariselli P, Martelli PL, Casadio R.</i>
(2009). Functional annotations improve the predictive score of human
disease-related mutations in proteins. <b>Human Mutation</b>.
30: 1237-1244.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/19514061">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Calabrese_HumMut09.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1002/humu.21047" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1002/humu.21047" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=8>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E</span>, Calabrese R, Casadio R.</i> (2006). Predicting the
insurgence of human genetic diseases associated to single point protein
mutations with support vector machines and evolutionary information.
<b>Bioinformatics</b>. 22: 2729-2734.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/16895930">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/BioinfDis06.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<a target=blank href="https://snps.biofold.org/phd-snp"><img width="18" src="pages/img/webserver.jpg"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/bioinformatics/btl423" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/bioinformatics/btl423" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
</ul>
</td></tr></tbody></table>
<div class="text">
<h4 class="section">
Protein folding stability and kinetics
</h4></div>
<table cellpadding="7" cellspacing="7" class="paper">
<tbody><tr><td>
<ul>
<li class="text" value=46>
<p class='text-justify'>
<i>Montanucci L<sup>†</sup>, <span style="font-weight:500;">Capriotti E<sup>†</sup></span>, Birolo G, Benevenuta S, Pancotti C, Lal D, Fariselli P</i> (2022).
DDGun: an untrained predictor of protein stability changes upon amino acid variants.
<b>Nucleic Acids Research</b>. DOI:10.1093/nar/gkac325.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/35524565"><img src="pages/img/pubmed.gif"></a>
<a href="https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkac325/43614328/gkac325.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/gkac325-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<a href="pages/documents/papers/ddgun-preds.tar.gz">
<img width="15" src="pages/img/zip.gif"></a>
<a target=blank href="https://folding.biofold.org/ddgun"><img width="16" src="pages/img/webserver.jpg"></a>
<a target=blank href="https://github.com/biofold/ddgun"><img width="20" src="pages/img/github.png"></a>
<a target=blank href="https://hub.docker.com/r/biofold/ddgun"><img width="24" src="pages/img/docker.png"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/nar/gkac325" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/nar/gkac325" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br>
<br>
<li class="text">
<p class='text-justify'>
<i>Turina P, Fariselli P*, <span style="font-weight:500;">Capriotti E*</span></i>. (2021).
ThermoScan: Semi-automatic identification of protein stability data from PubMed.
<b>Frontiers in Molecular Biosciences</b>.8:620475. DOI:10.3389/fmolb.2021.620475
<br>
<a target=blank href="https://pubmed.ncbi.nlm.nih.gov/33842537"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/turina_fmbs2021.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/turina_fmbs2021_supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<a href="pages/documents/papers/thermoscan-supfiles.tar.gz">
<img width="15" src="pages/img/zip.gif"></a>
<a target=blank href="https://folding.biofold.org/thermoscan"><img width="18" src="pages/img/webserver.jpg"></a>
<a target=blank href="https://github.com/biofold/ThermoScan"><img width="20" src="pages/img/github.png"></a>
<span class="__dimensions_badge_embed__" data-doi="10.3389/fmolb.2021.620475" data-hide-zero-citations="false" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.3389/fmolb.2021.620475" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="false"></a> </span>
<br><br>
<li class="text" value=14>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E</span>, Fariselli P, Rossi I, Casadio R.</i> (2008). A three-state
prediction of single point mutations on protein stability changes.
<b>BMC Bioinfomatics</b>. 9 (Suppl 2): S6.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/18387208">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Capriotti_BMCBioinfo08.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1186/1471-2105-9-S2-S6" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1186/1471-2105-9-S2-S6" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=11>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E*</span>, Casadio R.</i> (2007). K-Fold: a tool for the prediction of
the protein folding kinetic order and rate.
<b>Bioinformatics</b>. 23: 385-386.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/17138584">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/KFold_Bioinfo07.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<a target=blank href="https://folding.biofold.org/k-fold"><img width="18" src="pages/img/webserver.jpg"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/bioinformatics/btl610" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/bioinformatics/btl610" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=5>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E</span>, Fariselli P, Casadio R.</i> (2005). I-Mutant2.0: predicting
stability changes upon mutation from the protein sequence or structure.
<b>Nucleic Acids Research</b>. 33(Web Server issue): W306-W310.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/15980478">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/nar05.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<a target=blank href="https://folding.biofold.org/i-mutant"><img width="18" src="pages/img/webserver.jpg"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/nar/gki375" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/nar/gki375" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=4>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E</span>, Fariselli P, Calabrese R, Casadio R.</i> (2005) Predicting
protein stability changes from sequences using support vector machines.
<b>Bioinformatics</b>. 21: ii54-ii58.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/16204125">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/ECCB05.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/bioinformatics/bti1109" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/bioinformatics/bti1109" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=3>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E</span>, Fariselli, Casadio R</i> (2004). A neural network-based
method for predicting protein stability changes upon single point mutations.
<b>Bioinformatics</b>. 20 (Suppl 1): I63-I68<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/15262782">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/ISMB04.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/bioinformatics/bth928" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/bioinformatics/bth928" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
</ul>
</td></tr></tbody></table>
<div class="text">
<h4 class="section">
RNA and protein structure comparison and prediction
</h4></div>
<table cellpadding="7" cellspacing="7" class="paper">
<tbody><tr><td>
<ul>
<li class="text" value=20>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E<sup>†</sup></span>, Norambuena T<sup>†</sup>, Marti-Renom MA, Melo F. </i> (2011).
All atom knowledge-based potential for RNA structure prediction and assessment.
<b>Bioinformatics</b>. 27; 1086-1093.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/21349865">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Capriotti_Bioinformatics2011.pdf">
<a href="pages/documents/papers/Capriotti_Bioinformatics2011-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/bioinformatics/btr093" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/bioinformatics/btr093" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=18>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E</span>, Marti-Renom MA.</i> (2010). Quantifying the relationship
between sequence and three-dimensional structure conservation in RNA.
<b>BMC Bioinformatics</b>. 11: 322.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/20550657">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Capriotti_BMCBioinfo2010.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/Capriotti_BMCBioinfo2010-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1186/1471-2105-11-322" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1186/1471-2105-11-322" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=16>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E</span>, Marti-Renom MA.</i> (2009). SARA: a server for function
annotation of RNA structures. <b>Nucleic Acids Research</b>. 37
(Web Server issue): W260-W265.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/19483098">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/CapriottiNAR09.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<a target=blank href="https://structure.biofold.org/sara"><img width="18" src="pages/img/webserver.jpg"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/nar/gkp433" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/nar/gkp433" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=15>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E</span>, Marti-Renom MA.</i> (2008). RNA structure alignment by
a unit-vector approach.
<b>Bioinformatics</b>. 24: i112-i116.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/18689811">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Capriotti_ECCB08.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/bioinformatics/btn288" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/bioinformatics/btn288" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=1>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E</span>, Fariselli P, Rossi I, Casadio R</i> (2004). A Shannon
entropy-based filter detects high-quality profile-profile alignments in
searches for remote homologues.
<b>Proteins</b>. 54: 351-360.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/14696197">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Proteins04.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1002/prot.10564" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1002/prot.10564" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
</ul>
</td></tr></tbody></table>
<div class="text">
<h4 class="section">
Other topics
</h4></div>
<table cellpadding="7" cellspacing="7" class="paper">
<tbody><tr><td>
<ul>
<li class="text" value=38>
<p class='text-justify'>
<i>Khass M, Blackburn T, Burrows PD, Walter MR, <span style="font-weight:500;">Capriotti E</span>, Schroeder HW Jr.</i>
(2016).
VpreB serves as an invariant surrogate antigen for selecting immunoglobulin antigen-binding sites. <b>Science
Immunology.</b> 1: aaf6628.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/28217764"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/khass_scienceimmunology2016.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1126/sciimmunol.aaf6628" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1126/sciimmunol.aaf6628" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=19>
<p class='text-justify'>
<i>Bau D, Sanyal A, Lajoie BR, <span style="font-weight:500;">Capriotti E</span>, Byron M, Lawrence JB, Dekker J, Marti-Renom MA. </i> (2011). The three-dimensional folding of the alpha-globin gene domain reveals formation of chromatin globules.
<b>Nat Struct Mol Biol</b>. 18: 107-114.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/21131981">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Bau_NSMB2011.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/Bau_NSMB2011-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1038/nsmb.1936" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1038/nsmb.1936" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
</ul>
</td></tr></tbody></table>
<div class="text">
<h4 class="section">
Reviews
</h4></div>
<table cellpadding="7" cellspacing="7" class="paper">
<tbody><tr><td>
<ul>
<li class="text" value=42>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E*</span>, Ozturk K, Carter H*.</i> (2019).
Integrating molecular network with genetic variant interpretation for precision medicine.
<b>WIREs Systems Biology and Medicine.</b>
11: e1443.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/30548534"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/capriotti_wsbm2018.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1002/wsbm.1443" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1002/wsbm.1443" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=37>
<p class='text-justify'>
<i> Tian R, Basu MK, <span style="font-weight:500;">Capriotti E*</span>.</i> (2015).
Computational methods and resources for the interpretation of genomic variants in cancer.
<b>BMC Genomics.</b> 16 (Suppl. 8): S7.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/26111056"><img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Tian_BMCGenomics2015.pdf"><img width="15" src="pages/img/pdf.gif"></a>
<a href="pages/documents/papers/Tian_BMCGenomics2015-supmat.pdf">
<img width="15" src="pages/img/doc.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1186/1471-2164-16-S8-S7" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1186/1471-2164-16-S8-S7" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=32>
<p class='text-justify'>
<i>Compiani M<sup>†</sup>*, <span style="font-weight:500;">Capriotti E<sup>†</sup>*</span>.</i> (2013).
Computational and theoretical methods for protein folding.
<b>Biochemistry.</b> 52: 8601-8624.<br>
<a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/24187909"><img src="pages/img/pubmed.gif" /></a>
<a href="pages/documents/papers/Compiani_Biochemistry2013.pdf"><img width="15" src="pages/img/pdf.gif" /></a>
<span class="__dimensions_badge_embed__" data-doi="10.1021/bi4001529" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1021/bi4001529" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=26>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E<sup>†</sup>*</span>, Nehrt NL<sup>†</sup>, Kann MG<sup>†*</sup>*, Bromberg Y<sup>†</sup>*.</i> (2012).
Bioinformatics for personal genome interpretation.
<b>Briefings in Bioinformatics</b>. 13; 495-512.<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/22247263">
<img src="pages/img/pubmed.gif"></a>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3404395/pdf/bbr070.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/bib/bbr070" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/bib/bbr070" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=22>
<p class='text-justify'>
<i>Fernald GH, <span style="font-weight:500;">Capriotti E</span>, Daneshjou R, Karczewski KJ, Altman RB.</i> (2011).
Bioinformatics challenges for personalized medicine.
<b>Bioinformatics.</b> 27; 1741-1748<br>
<a target=blank href="http://www.ncbi.nlm.nih.gov/pubmed/21596790">
<img src="pages/img/pubmed.gif"></a>
<a href="pages/documents/papers/Fernald_Bioinformatics2011.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.1093/bioinformatics/btr295" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.1093/bioinformatics/btr295" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
<br>
<br>
<li class="text" value=13>
<p class='text-justify'>
<i><span style="font-weight:500;">Capriotti E</span>, Marti-Renom MA.</i> (2008). Computational RNA structure
prediction. <b>Current Bioinformatics</b>. 3: 32-45.<br>
<a target=blank href="http://benthamscience.com/journal/abstracts.php?journalID=cbio&articleID=82019">
<img src="pages/img/abstract.gif"></a>
<a href="pages/documents/papers/Capriotti_CBio08.pdf">
<img width="15" src="pages/img/pdf.gif"></a>
<span class="__dimensions_badge_embed__" data-doi="10.2174/157489308783329823" data-hide-zero-citations="true" data-style="small_rectangle" style="display:inline-block;"></span>
<span style="display:inline-block;"><a href="https://plu.mx/plum/a/?doi=10.2174/157489308783329823" class="plumx-plum-print-popup" data-size="tiny" data-popup="right" data-badge="true" data-hide-when-empty="true"></a> </span>
</ul>
</td></tr>
<tr><td>
<br>
<div class="text">
<h4 class="section">
Citations
</h4></div>
<p class='text-justify'>
<ul class="text">
<li>
<a href="http://scholar.google.es/citations?user=qAa7Et0AAAAJ" target=blank>Google Scholar</a>
<br>
<li>
<a href="http://www.scopus.com/authid/detail.url?authorId=8851983500" target=blank>Scopus Preview</a>
<br>
<li>
<a href="http://www.researcherid.com/rid/D-9318-2011" target=blank>ResearcherID</a>
</ul>
</p>
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