From 14b8dbf7c02d4a10a6fcffa5be3a189ea1b67c81 Mon Sep 17 00:00:00 2001
From: Jonathan Karr <jonrkarr@gmail.com>
Date: Sat, 21 Aug 2021 00:29:22 -0400
Subject: [PATCH] chore: corrected documentation of observables

---
 biosimulators.json                            | 36 +++++++++++++++++++
 biosimulators/Dockerfile                      |  2 +-
 .../biosimulators_libsbmlsim/_version.py      |  2 +-
 3 files changed, 38 insertions(+), 2 deletions(-)

diff --git a/biosimulators.json b/biosimulators.json
index 0f70331..b4224c9 100644
--- a/biosimulators.json
+++ b/biosimulators.json
@@ -154,6 +154,10 @@
                 {
                     "variables": "parameter values",
                     "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"
+                },
+                {
+                    "variables": "compartment sizes",
+                    "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"
                 }
             ],
             "availableSoftwareInterfaceTypes": ["library", "command-line application",
@@ -232,6 +236,10 @@
                 {
                     "variables": "parameter values",
                     "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"
+                },
+                {
+                    "variables": "compartment sizes",
+                    "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"
                 }
             ],
             "availableSoftwareInterfaceTypes": ["library", "command-line application",
@@ -294,6 +302,10 @@
                 {
                     "variables": "parameter values",
                     "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"
+                },
+                {
+                    "variables": "compartment sizes",
+                    "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"
                 }
             ],
             "availableSoftwareInterfaceTypes": ["library", "command-line application",
@@ -356,6 +368,10 @@
                 {
                     "variables": "parameter values",
                     "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"
+                },
+                {
+                    "variables": "compartment sizes",
+                    "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"
                 }
             ],
             "availableSoftwareInterfaceTypes": ["library", "command-line application",
@@ -418,6 +434,10 @@
                 {
                     "variables": "parameter values",
                     "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"
+                },
+                {
+                    "variables": "compartment sizes",
+                    "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"
                 }
             ],
             "availableSoftwareInterfaceTypes": ["library", "command-line application",
@@ -480,6 +500,10 @@
                 {
                     "variables": "parameter values",
                     "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"
+                },
+                {
+                    "variables": "compartment sizes",
+                    "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"
                 }
             ],
             "availableSoftwareInterfaceTypes": ["library", "command-line application",
@@ -542,6 +566,10 @@
                 {
                     "variables": "parameter values",
                     "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"
+                },
+                {
+                    "variables": "compartment sizes",
+                    "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"
                 }
             ],
             "availableSoftwareInterfaceTypes": ["library", "command-line application",
@@ -620,6 +648,10 @@
                 {
                     "variables": "parameter values",
                     "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"
+                },
+                {
+                    "variables": "compartment sizes",
+                    "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"
                 }
             ],
             "availableSoftwareInterfaceTypes": ["library", "command-line application",
@@ -698,6 +730,10 @@
                 {
                     "variables": "parameter values",
                     "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"
+                },
+                {
+                    "variables": "compartment sizes",
+                    "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"
                 }
             ],
             "availableSoftwareInterfaceTypes": ["library", "command-line application",
diff --git a/biosimulators/Dockerfile b/biosimulators/Dockerfile
index b6ab2ab..a2d84b1 100644
--- a/biosimulators/Dockerfile
+++ b/biosimulators/Dockerfile
@@ -1,7 +1,7 @@
 # Base OS
 FROM python:3.9-slim-buster
 
-ARG VERSION=0.0.1
+ARG VERSION=0.0.2
 ARG SIMULATOR_VERSION=1.4.0
 ARG LIBSBML_VERSION=5.19.0
 
diff --git a/biosimulators/biosimulators_libsbmlsim/_version.py b/biosimulators/biosimulators_libsbmlsim/_version.py
index b8023d8..d18f409 100644
--- a/biosimulators/biosimulators_libsbmlsim/_version.py
+++ b/biosimulators/biosimulators_libsbmlsim/_version.py
@@ -1 +1 @@
-__version__ = '0.0.1'
+__version__ = '0.0.2'