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setup.py
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setup.py
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import re
import setuptools
import subprocess
import sys
try:
result = subprocess.run(
[sys.executable, "-m", "pip", "show", "pkg_utils"],
check=True, capture_output=True)
match = re.search(r'\nVersion: (.*?)\n', result.stdout.decode(), re.DOTALL)
assert match and tuple(match.group(1).split('.')) >= ('0', '0', '5')
except (subprocess.CalledProcessError, AssertionError):
subprocess.run(
[sys.executable, "-m", "pip", "install", "-U", "pkg_utils"],
check=True)
import os
import pkg_utils
name = '<my_simulator>'
dirname = os.path.dirname(__file__)
# get package metadata
md = pkg_utils.get_package_metadata(dirname, name)
with open(os.path.join(os.path.dirname(__file__), 'README.md'), 'r') as file:
long_description = file.read()
# install package
setuptools.setup(
name=name,
version=md.version,
description=("BioSimulators-compliant command-line interface to "
"the <MySimulator> simulation program <https://url.for.my.simulator>."),
long_description=long_description,
long_description_content_type='text/markdown',
url="https://github.com/<organization>/<repository>",
download_url="https://github.com/<organization>/<repository>",
author='<Authors of MySimulator>',
author_email="<authors@url.for.my.simulator>",
license="<License, e.g., MIT>",
keywords=['BioSimulators', '<key-word-1>', '<key-word-2>'], # list of key words
packages=setuptools.find_packages(exclude=['tests', 'tests.*']),
install_requires=md.install_requires,
extras_require=md.extras_require,
tests_require=md.tests_require,
dependency_links=md.dependency_links,
classifiers=[
'Development Status :: 3 - Alpha',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: MIT License',
'Topic :: Scientific/Engineering :: Bio-Informatics',
],
entry_points={
'console_scripts': [
'biosimulators-<my-simulator> = <my_simulator>.__main__:main',
],
},
)