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Biosimulators_utils is incompatible with numpy>=1.23.0 #115
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According to numpy/numpy#21029, Numpy no longer accepts non-tuple based indexing of nd-arrays.
The ReportReader at biosimulators_utils/report/io.py:271 uses this deprecated feature (Note: this may not be the only occurrence of this issue in the project):
data_set_results[i_data_set][data_set_slice]
where
data_set_results
is a ndarray of ndarrays of float64 datai_data_set
is an intdata_set_slice
is alist
ofslice
objectsLong term all instances of this issue should be patched out properly, but short term changing the requirement to
numpy<=1.22.4
would, for example, help fix biosimulators_test_suite.The text was updated successfully, but these errors were encountered: