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setup.py
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setup.py
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import re
from setuptools import setup, find_packages
__version__ = "0.0.18"
with open("README.md", "r") as readme:
description = readme.read()
# Patch the relative links to absolute URLs that will work on PyPI.
description2 = re.sub(
r']\(([\w/.-]+\.png)\)',
r'](https://github.com/vivarium-collective/process-bigraph/raw/main/\1)',
description)
long_description = re.sub(
r']\(([\w/.-]+)\)',
r'](https://github.com/vivarium-collective/process-bigraph/blob/main/\1)',
description2)
setup(
name="biosimulator-processes",
version=__version__,
author="Ryan Spangler, Eran Agmon, Alex Patrie",
author_email="ryan.spangler@gmail.com, agmon.eran@gmail.com, alexanderpatrie@gmail.com",
description="",
long_description=long_description,
long_description_content_type="text/markdown",
url="https://github.com/vivarium-collective/biosimulator-processes",
packages=find_packages(),
classifiers=[
"Development Status :: 3 - Alpha",
"Intended Audience :: Developers",
"License :: OSI Approved :: MIT License",
"Operating System :: OS Independent",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.6",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
],
python_requires=">=3.10",
install_requires=[
"bigraph-schema",
# "process-bigraph",
"bigraph-builder",
"numpy",
"pytest>=6.2.5",
"tellurium",
"copasi-basico",
"cobra",
"zarr",
"termcolor",
"jupyterlab",
"notebook",
"bigraph-viz",
"bigraph-builder",
"python-libsbml" # ==5.20.2",
"docker>=7.0",
"toml",
"python-libnuml==1.1.6" # ">=1.0.0"
],
extras_require={
"smoldyn": ["smoldyn", "simulariumio"],
}
)