- Added support for Birdhouse Helper Bot (for bumping versions).
- CI Actions and Python dependencies are now pinned to hashes.
- Permissions have been set for all workflows.
- Pinned cf-xarray` below v0.9.3.
- Reformatted and renamed CHANGES.rst to CHANGELOG.rst.
- Replaced unidecode with anyascii due to a licensing issue.
- Synchronized some dependencies across build systems.
- Added a workaround in
wps_geoseries_to_netcdfto handle a pandas v2.0 behaviour change.
- Renamed the installed package from finch to birdhouse-finch.
- First release of the birdhouse-finch package on PyPI.
- Versioning now adheres to SemVer v2.0.0.
- Added a Makefile recipe to the repository to evaluate notebooks while ignoring the output cells.
- Cleaned up documentation to facilitate easier navigation.
- Slightly reorganized the documentation for easier navigation.
- Fast-forwarded the cookiecutter.
- Fixed the
Manifest.into add all necessary files to wheel. - Removed references to files that have never existed (apidoc).
- Cleaned up the setup code.
- Added more files to be ignored in the .gitignore and in the Manifest.in.
- Fixed a bug that occurred when fixing a broken cftime-index with newer cftime versions.
- Placed pins on xarray and pandas to prevent future errors from changes to frequency codes.
- Updated ReadTheDocs to use the new mambaforge version (2022.9).
- Addressed calls in GitHub Action usage that were emitting warnings.
- Updated MANIFEST.in to include and exclude the relevant files for the source distribution.
- Modified the setup.py to only include the files necessary in the wheel.
- Updated AUTHORS.rst to list more contributors.
- Removed namespace file (__init__.py) from tests to ensure that they aren't treated like an importable package.
- Updated pre-commit hooks.
- Sorted software requirements for legibility.
- Removed Travis-CI shell script.
- Added a Docker-based testing suite to the GitHub Workflows.
- Added a wider range of Python versions to test against in the GitHub Workflows.
- Migrated conda-build action from mamba-org/provision-with-micromamba to mamba-org/setup-micromamba.
- Cleaned up the Dockerfile. Docker now pip-installs finch directly from the GitHub repository.
- Finch now explicitly supports Python3.11.
- Pinned Python below 3.12 on conda and removed pin on pint for ReadTheDocs builds.
- Added a GitHub Workflow to bump the version number and to create tags from the version bumping process on dispatch.
- Added a pre-commit hook for validating the ReadTheDocs configuration and GitHub Workflows.
- Update to xclim 0.43.0.
- Added xclim yml module support:
- Added humidex days above calculation via yml module.
- Reimplmented streamflow indicators via yml module (adjust for xclim 0.41 breaking changes).
- Fixed bug for CanDCS-U6 ensemble "26models" list.
- Passing an empty string to ensemble_percentiles in ensemble processes will return the merged un-reduced ensemble. The different members are listed along the realization coordinates through raw names allowing for basic distinction between the input members.
- Fixed iter_local when depth > 0 to avoid all files to be considered twice
- Revised documentation configuration on ReadTheDocs to leverage Anaconda (Mambaforge)
- Minor adjustments to dependency configurations
- Removed configuration elements handling from finch start. One can still pass custom config files, but all configuration defaults are handled by finch/default.cfg and the WSGI function. jinja2 is not a dependency anymore.
- Generalize ensemble datasets configuration.
- Datasets usable by ensemble processes are now specified through a YAML file which is pointed to in the configuration.
- As a consequence processes are generated according to the available variables. Similarly for the allowed values of some inputs on these processes.
- The output name now includes the dataset name (if a custom name was not specified).
finch.processes.xclimwas removed, there is no static module of processes.- Input "rcp" has been renamed to "scenario".
- Input "dataset_name" has been fixed and renamed to "dataset".
- Update to xclim 0.38.0.
- Improved subset_grid_point_dataset & subset_bbox_dataset performance when using local files.
- Fix Finch unable to startup in the Docker image.
- Avoid using a broken version of
libarchivein the Docker image.
- Fix use of
output_name, addoutput_formatto xclim indicators. - Change all outputs to use
outputas the main output field name (instead ofoutput_netcdf). - Updated to xclim 0.37.0:
- Percentile inputs of xclim indicators have been renamed with generic names, excluding an explicit mention to the target percentile.
- In ensemble processes, these percentiles can now be chosen through
perc_[var]inputs. The default values are inherited from earlier versions of xclim.
- Average shape process downgraded to be single-threaded, as ESMF seems to have issues with multithreading.
- Removed deprecated processes
subset_ensemble_bbox_BCCAQv2,subset_ensemble_BCCAQv2andBCCAQv2_heat_wave_frequency_gridpoint. - Added
csv_precisionto all processes allowing CSV output. When given, it controls the number of decimal places in the output.
- Preserve RCP dimension in ensemble processes, even when only RCP is selected.
- Pin
daskanddistributedat2022.1.0, see Ouranosinc/PAVICS-e2e-workflow-tests#100
- Add
geoseries_to_netcdfprocess, converting a geojson (like a OGC-API request) to a CF-compliant netCDF. - Add
output_nameargument to most processes (excepted subsetting and averaging processes), to control the name (or prefix) of the output file. - New dependency
python-slugifyto ensure filenames are safe and valid. - Pinning dask to
<=2022.1.0to avoid a performance issue with2022.1.1.
- Add
hourly_to_dailyprocess, converting hourly data to daily data using a reduction operation (sum, mean, max, min). - Upgrade to clisops 0.8.0 to accelerate spatial averages over regions.
- Upgrade to xesmf 0.6.2 to fix spatial averaging bug not weighing correctly cells with varing areas.
- Update to PyWPS 4.5.1 to allow the creation of recursive directories for outputs.
- Upgrading to birdy 0.8.1 will remove annoying warnings when accessing netCDF files from THREDDS.
- Fix Sentry SDK initialization error
- Update to xclim 0.31
- Added SENTRY_ENV configuration
- Possibility to pass multiple "rcp" inputs for ensemble processes.
- Writing to netcdf is done only after calling
load()to avoid locks occurring within dask calls toto_netcdfin multi-processing mode. - Add an
averageparameter to ensemble processes. When true, a spatial average is returned.
- Update to xclim 0.27.0
- Added
empirical_quantile_mappingprocess callingxclim.sdba.EmpiricalQuantileMapping. - Update to PyWPS 4.4.5
- Update to xclim 0.26.0.
- Default metadata attributes are given through configuration, instead of being hardcoded.
- Inclusion of a list of input dataset urls in ensemble processes.
- Correct ensemble statistics on day-of-year indicators.
- Workaround for clisops shutting down logging
- More flexible chunking
- New subsetting & averaging notebook
- Require xESMF>=0.5.3
- Add data_validation and cf_compliance arguments for ensemble xclim processes.
- Add data_validation and cf_compliance arguments for xclim processes.
- Skip data_validation checks for the BCCAQv2HeatWave process.
- Add new process averaging gridded fields over a polygon using xESMF
- Update to xclim 0.24, allowing for considerable simplification of the indicator process building mechanism
- Update to PyWPS 4.4
- Add partial support for xclim 0.23 with new indicators
- Add support for land indicators
- Add support for multivariate indicators
- Upgrade PyWPS to 4.2.10
- Fix bug in variable name inference
- Add support for non-standard variable name (univariate case only)
- fix to chunk regions of subsetted files
- use cruft to propagate changes from the birdhouse cookiecutter
- catch documentation build error earlier since doc build is part of regular CI build
- catch tutorial notebooks out of sync with code earlier since also part of regular CI build
- use mock imports to facilitate building docs
- add partial support for xclim v0.21
- add support for shapefiles in subset_shape
- fix to remove realization coordinate from ensembles
- added chunk datasets for local files also
- update xclim to == 0.15.2
- fix local bccaqv2 files filtering
- update xclim to 0.15.0
- add french translation of processes abstract and descriptions
- fix #103 (drs_filename) add defaults when project_id is unknown
- drs_filenames: use dash instead of underscores in variable names
- fix #80 frequency attrs of computed datasets
- Add ensembles processes
- Allow ensemble process to specify which models are included
- Accept multiple files for processing
- Update from latest cookie-cutter template
- Add grid point indicator processes
- Add ensemble bbox processes
- Add support for percentiles inputs
- Update xclim to 0.14
- Pin PyWPS to 4.2.4
- Add DODS to supported formats for resources
- Extract common inputs and outputs to wpsio.py
- Speed up CSV creation
- Explicitly close thread pool
- Tests for CSV conversion
- Added subset_shape process
- Pin PyWPS to ~4.2.3
- Add start and end date to bccaqv2 subset
- Identifier DAP link by header
- Datetime fix when replacing hour to 12
- deprecate lon0 and lat0 for SubsetGridPointBCCAQV2Process
- change point subset processes to accept a comma separated list of floats for multiple grid cells
- Fix for segmentation fault in libnetcdf (pin version to 4.6.2 until a fix is released)
- Notebooks are tested by Travis-CI
- Bug fix
- Update xclim to >= 0.12.2
- Update pywps to > 4.2.3
- Add test for DAP input to subsetting
- Update notebook to run on the Jenkins test suite
- Allow creating CSV output
- Keep global attributes when computing indices
- Add BCCAQV2HeatWave process
- Add basic usage notebook
- Require Python>=3.6
- Fix percentages in status update
- Improve loggin
- Added subset_gridpoint process
- Support DAP links
- Added bounding box subsetting
- Threshold arguments passed as strings with units
- Added test for heat_wave_frequency
- Use sentry to monitor error messages
- Include Dockerfile
- Use processes instead of threads
- First release.