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bioMONAI-env.yml
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name: bioMONAI-env
channels:
- pytorch
- fastai
- nvidia
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- asttokens=2.0.5=pyhd3eb1b0_0
- astunparse=1.6.3=py_0
- atk-1.0=2.36.0=ha1a6a79_0
- backcall=0.2.0=pyhd3eb1b0_0
- blas=1.0=mkl
- boost-cpp=1.82.0=hdb19cb5_2
- bottleneck=1.3.5=py311hbed6279_0
- brotli=1.0.9=h5eee18b_7
- brotli-bin=1.0.9=h5eee18b_7
- brotli-python=1.0.9=py311h6a678d5_7
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.19.1=h5eee18b_0
- ca-certificates=2024.8.30=hbcca054_0
- cairo=1.16.0=hb05425b_5
- catalogue=2.0.7=py311h06a4308_0
- certifi=2024.7.4=pyhd8ed1ab_0
- cffi=1.16.0=py311h5eee18b_0
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- click=8.1.7=py311h06a4308_0
- colorama=0.4.6=py311h06a4308_0
- comm=0.1.2=py311h06a4308_0
- contourpy=1.2.0=py311hdb19cb5_0
- cryptography=41.0.7=py311hdda0065_0
- cuda=11.8.0=0
- cuda-cccl=12.6.37=0
- cuda-cccl_linux-64=12.6.37=0
- cuda-command-line-tools=11.8.0=0
- cuda-compiler=12.6.0=0
- cuda-cudart=11.8.89=0
- cuda-cudart-dev=11.8.89=0
- cuda-cuobjdump=12.6.68=0
- cuda-cupti=11.8.87=0
- cuda-cuxxfilt=12.6.68=0
- cuda-demo-suite=12.4.127=0
- cuda-documentation=12.4.127=0
- cuda-driver-dev=12.6.68=0
- cuda-driver-dev_linux-64=12.6.68=0
- cuda-gdb=12.6.68=0
- cuda-libraries=11.8.0=0
- cuda-libraries-dev=12.6.0=0
- cuda-memcheck=11.8.86=0
- cuda-nsight=12.6.68=0
- cuda-nvcc=12.4.131=0
- cuda-nvdisasm=12.6.68=0
- cuda-nvml-dev=12.6.68=2
- cuda-nvprof=12.6.68=0
- cuda-nvprune=12.6.68=0
- cuda-nvrtc=11.8.89=0
- cuda-nvrtc-dev=11.8.89=0
- cuda-nvtx=11.8.86=0
- cuda-nvvp=12.6.68=0
- cuda-opencl=12.6.68=0
- cuda-opencl-dev=12.6.68=0
- cuda-profiler-api=12.6.68=0
- cuda-runtime=11.8.0=0
- cuda-sanitizer-api=12.6.68=0
- cuda-toolkit=11.8.0=0
- cuda-tools=11.8.0=0
- cuda-version=12.6=3
- cuda-visual-tools=12.6.0=0
- cycler=0.11.0=pyhd3eb1b0_0
- cymem=2.0.6=py311h6a678d5_0
- cyrus-sasl=2.1.28=h52b45da_1
- cython-blis=0.7.9=py311hf4808d0_0
- dbus=1.13.18=hb2f20db_0
- debugpy=1.6.7=py311h6a678d5_0
- decorator=5.1.1=pyhd3eb1b0_0
- execnb=0.1.5=py_0
- executing=0.8.3=pyhd3eb1b0_0
- expat=2.5.0=h6a678d5_0
- fastdownload=0.0.7=py_0
- fastprogress=1.0.3=py_0
- ffmpeg=4.3=hf484d3e_0
- filelock=3.13.1=py311h06a4308_0
- font-ttf-dejavu-sans-mono=2.37=hd3eb1b0_0
- font-ttf-inconsolata=2.001=hcb22688_0
- font-ttf-source-code-pro=2.030=hd3eb1b0_0
- font-ttf-ubuntu=0.83=h8b1ccd4_0
- fontconfig=2.14.1=h4c34cd2_2
- fonts-anaconda=1=h8fa9717_0
- fonts-conda-ecosystem=1=hd3eb1b0_0
- fonttools=4.25.0=pyhd3eb1b0_0
- freetype=2.12.1=h4a9f257_0
- fribidi=1.0.10=h7b6447c_0
- gdk-pixbuf=2.42.10=h5eee18b_0
- gds-tools=1.8.1.2=0
- ghapi=1.0.3=py_0
- giflib=5.2.1=h5eee18b_3
- glib=2.69.1=he621ea3_2
- gmp=6.2.1=h295c915_3
- gmpy2=2.1.2=py311hc9b5ff0_0
- gnutls=3.6.15=he1e5248_0
- gobject-introspection=1.72.0=py311hbb6d50b_2
- graphite2=1.3.14=h295c915_1
- graphviz=2.50.0=h1b29801_1
- gst-plugins-base=1.14.1=h6a678d5_1
- gstreamer=1.14.1=h5eee18b_1
- gtk2=2.24.33=h73c1081_2
- gts=0.7.6=hb67d8dd_3
- harfbuzz=4.3.0=hf52aaf7_2
- icu=73.1=h6a678d5_0
- idna=3.4=py311h06a4308_0
- intel-openmp=2023.1.0=hdb19cb5_46306
- ipykernel=6.25.0=py311h92b7b1e_0
- ipython=8.15.0=py311h06a4308_0
- ipywidgets=8.0.4=py311h06a4308_0
- jedi=0.18.1=py311h06a4308_1
- jinja2=3.1.2=py311h06a4308_0
- joblib=1.2.0=py311h06a4308_0
- jpeg=9e=h5eee18b_1
- jupyter_client=8.6.0=py311h06a4308_0
- jupyter_core=5.5.0=py311h06a4308_0
- jupyterlab_widgets=3.0.9=py311h06a4308_0
- kiwisolver=1.4.4=py311h6a678d5_0
- krb5=1.20.1=h143b758_1
- lame=3.100=h7b6447c_0
- langcodes=3.3.0=pyhd3eb1b0_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libboost=1.82.0=h109eef0_2
- libbrotlicommon=1.0.9=h5eee18b_7
- libbrotlidec=1.0.9=h5eee18b_7
- libbrotlienc=1.0.9=h5eee18b_7
- libclang=14.0.6=default_hc6dbbc7_1
- libclang13=14.0.6=default_he11475f_1
- libcublas=11.11.3.6=0
- libcublas-dev=11.11.3.6=0
- libcufft=10.9.0.58=0
- libcufft-dev=10.9.0.58=0
- libcufile=1.8.1.2=0
- libcufile-dev=1.8.1.2=0
- libcups=2.4.2=h2d74bed_1
- libcurand=10.3.4.101=0
- libcurand-dev=10.3.4.101=0
- libcurl=8.4.0=h251f7ec_1
- libcusolver=11.4.1.48=0
- libcusolver-dev=11.4.1.48=0
- libcusparse=11.7.5.86=0
- libcusparse-dev=11.7.5.86=0
- libdeflate=1.17=h5eee18b_1
- libedit=3.1.20221030=h5eee18b_0
- libev=4.33=h7f8727e_1
- libffi=3.4.4=h6a678d5_0
- libgcc-ng=11.2.0=h1234567_1
- libgd=2.3.3=h695aa2c_1
- libgfortran-ng=11.2.0=h00389a5_1
- libgfortran5=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libiconv=1.16=h7f8727e_2
- libidn2=2.3.4=h5eee18b_0
- libjpeg-turbo=2.0.0=h9bf148f_0
- libllvm14=14.0.6=hdb19cb5_3
- libnghttp2=1.57.0=h2d74bed_0
- libnpp=11.8.0.86=0
- libnpp-dev=11.8.0.86=0
- libnvfatbin=12.6.68=0
- libnvfatbin-dev=12.6.68=0
- libnvjitlink=12.6.68=0
- libnvjitlink-dev=12.6.68=0
- libnvjpeg=11.9.0.86=0
- libnvjpeg-dev=11.9.0.86=0
- libpng=1.6.39=h5eee18b_0
- libpq=12.15=hdbd6064_1
- librsvg=2.54.4=h36cc946_3
- libsodium=1.0.18=h7b6447c_0
- libssh2=1.10.0=hdbd6064_2
- libstdcxx-ng=11.2.0=h1234567_1
- libtasn1=4.19.0=h5eee18b_0
- libtiff=4.5.1=h6a678d5_0
- libtool=2.4.6=h6a678d5_1009
- libunistring=0.9.10=h27cfd23_0
- libuuid=1.41.5=h5eee18b_0
- libwebp=1.3.2=h11a3e52_0
- libwebp-base=1.3.2=h5eee18b_0
- libxcb=1.15=h7f8727e_0
- libxkbcommon=1.0.1=h5eee18b_1
- libxml2=2.10.4=hf1b16e4_1
- llvm-openmp=14.0.6=h9e868ea_0
- lz4-c=1.9.4=h6a678d5_0
- markdown-it-py=3.0.0=pyhd8ed1ab_0
- markupsafe=2.1.1=py311h5eee18b_0
- matplotlib=3.8.0=py311h06a4308_0
- matplotlib-base=3.8.0=py311ha02d727_0
- matplotlib-inline=0.1.6=py311h06a4308_0
- mdurl=0.1.2=pyhd8ed1ab_0
- mkl=2023.1.0=h213fc3f_46344
- mkl-service=2.4.0=py311h5eee18b_1
- mkl_fft=1.3.8=py311h5eee18b_0
- mkl_random=1.2.4=py311hdb19cb5_0
- mpc=1.1.0=h10f8cd9_1
- mpfr=4.0.2=hb69a4c5_1
- mpmath=1.3.0=py311h06a4308_0
- munkres=1.1.4=py_0
- murmurhash=1.0.7=py311h6a678d5_0
- mysql=5.7.24=h721c034_2
- ncurses=6.4=h6a678d5_0
- nest-asyncio=1.5.6=py311h06a4308_0
- nettle=3.7.3=hbbd107a_1
- networkx=3.1=py311h06a4308_0
- ninja-base=1.10.2=hd09550d_5
- nsight-compute=2024.1.1.4=0
- nspr=4.35=h6a678d5_0
- nss=3.89.1=h6a678d5_0
- numexpr=2.8.7=py311h65dcdc2_0
- numpy=1.26.2=py311h08b1b3b_0
- numpy-base=1.26.2=py311hf175353_0
- openh264=2.1.1=h4ff587b_0
- openjpeg=2.4.0=h3ad879b_0
- openssl=3.0.12=h7f8727e_0
- packaging=23.1=py311h06a4308_0
- pandas=2.1.4=py311ha02d727_0
- pango=1.50.7=h05da053_0
- parso=0.8.3=pyhd3eb1b0_0
- pathy=0.10.1=py311h06a4308_0
- pcre=8.45=h295c915_0
- pexpect=4.8.0=pyhd3eb1b0_3
- pickleshare=0.7.5=pyhd3eb1b0_1003
- pillow=10.0.1=py311ha6cbd5a_0
- pip=23.3.1=py311h06a4308_0
- pixman=0.40.0=h7f8727e_1
- platformdirs=3.10.0=py311h06a4308_0
- ply=3.11=py311h06a4308_0
- poppler=22.12.0=h9614445_3
- poppler-data=0.4.11=h06a4308_1
- preshed=3.0.6=py311h6a678d5_0
- prompt-toolkit=3.0.36=py311h06a4308_0
- psutil=5.9.0=py311h5eee18b_0
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pure_eval=0.2.2=pyhd3eb1b0_0
- pycparser=2.21=pyhd3eb1b0_0
- pygments=2.15.1=py311h06a4308_1
- pyopenssl=23.2.0=py311h06a4308_0
- pyparsing=3.0.9=py311h06a4308_0
- pyqt=5.15.10=py311h6a678d5_0
- pyqt5-sip=12.13.0=py311h5eee18b_0
- pysocks=1.7.1=py311h06a4308_0
- python=3.11.5=h955ad1f_0
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-graphviz=0.20.1=py311h06a4308_0
- python-tzdata=2023.3=pyhd3eb1b0_0
- pytorch=2.0.1=py3.11_cuda11.8_cudnn8.7.0_0
- pytorch-cuda=11.8=h7e8668a_5
- pytorch-mutex=1.0=cuda
- pytz=2023.3.post1=py311h06a4308_0
- pyyaml=6.0.1=py311h5eee18b_0
- pyzmq=25.1.0=py311h6a678d5_0
- qt-main=5.15.2=h53bd1ea_10
- readline=8.2=h5eee18b_0
- requests=2.31.0=py311h06a4308_0
- scikit-learn=1.2.2=py311h6a678d5_1
- scipy=1.11.4=py311h08b1b3b_0
- setuptools=68.2.2=py311h06a4308_0
- shellingham=1.5.0=py311h06a4308_0
- sip=6.7.12=py311h6a678d5_0
- six=1.16.0=pyhd3eb1b0_1
- smart_open=5.2.1=py311h06a4308_0
- spacy-legacy=3.0.12=py311h06a4308_0
- spacy-loggers=1.0.4=py311h06a4308_0
- sqlite=3.41.2=h5eee18b_0
- srsly=2.4.8=py311h6a678d5_0
- stack_data=0.2.0=pyhd3eb1b0_0
- sympy=1.12=py311h06a4308_0
- tbb=2021.8.0=hdb19cb5_0
- threadpoolctl=2.2.0=pyh0d69192_0
- tk=8.6.12=h1ccaba5_0
- torchaudio=2.0.2=py311_cu118
- torchtriton=2.0.0=py311
- torchview=0.2.6=pyhd8ed1ab_0
- torchvision=0.15.2=py311_cu118
- tornado=6.3.3=py311h5eee18b_0
- tqdm=4.65.0=py311h92b7b1e_0
- traitlets=5.7.1=py311h06a4308_0
- typer=0.9.0=py311h06a4308_0
- tzdata=2023c=h04d1e81_0
- urllib3=1.26.18=py311h06a4308_0
- wasabi=0.9.1=py311h06a4308_0
- watchdog=2.1.6=py311h06a4308_0
- wcwidth=0.2.5=pyhd3eb1b0_0
- wheel=0.41.2=py311h06a4308_0
- widgetsnbextension=4.0.5=py311h06a4308_0
- xz=5.4.5=h5eee18b_0
- yaml=0.2.5=h7b6447c_0
- zeromq=4.3.4=h2531618_0
- zlib=1.2.13=h5eee18b_0
- zstd=1.5.5=hc292b87_0
- pip:
- aicsimageio==4.14.0
- aicspylibczi==3.1.2
- aiobotocore
- aiofiles==23.2.1
- aiohttp==3.9.5
- aioitertools==0.11.0
- aiosignal==1.3.1
- altair==5.2.0
- annotated-types==0.6.0
- anyio==3.7.1
- asciitree==0.3.3
- attrs==23.1.0
- aws-requests-auth==0.4.3
- beautifulsoup4==4.12.2
- boto3
- botocore
- causal-conv1d==1.4.0
- cloudpathlib==0.16.0
- cloudpickle==3.0.0
- cmake==3.28.0
- confection==0.1.4
- dask==2024.5.0
- deprecated==1.2.14
- distributed==2024.5.0
- distro==1.8.0
- einops==0.8.0
- elementpath==4.4.0
- fastai==2.7.17
- fastapi==0.105.0
- fastcore==1.7.17
- fasteners==0.19
- fastjsonschema==2.20.0
- ffmpy==0.3.1
- fire==0.6.0
- frozenlist==1.4.1
- fsspec==2023.6.0
- gdown==4.7.1
- ghp-import==2.1.0
- gradio==4.9.0
- gradio-client==0.7.2
- h11==0.14.0
- h5py==3.11.0
- httpcore==1.0.2
- httpx==0.25.2
- huggingface-hub==0.24.6
- humanize==4.9.0
- imagecodecs==2024.1.1
- imagedata==2.1.3
- imageio==2.33.1
- importlib-metadata==7.0.0
- importlib-resources==6.1.1
- isodate==0.6.1
- itk-core==5.3.0
- itk-io==5.3.0
- jmespath==1.0.1
- jsonlines==1.2.0
- jsonschema==4.20.0
- jsonschema-specifications==2023.11.2
- lit==17.0.6
- locket==1.0.0
- lxml==4.9.4
- mamba-ssm==2.2.2
- medmnist==3.0.2
- monai==1.3.2
- msgpack==1.0.8
- multidict==6.0.5
- multipagetiff==3.0.9
- nbdev==2.3.31
- nbformat==5.10.4
- nibabel==5.2.0
- ninja==1.11.1.1
- numcodecs==0.12.1
- nvidia-cublas-cu11==11.10.3.66
- nvidia-cuda-cupti-cu11==11.7.101
- nvidia-cuda-nvrtc-cu11==11.7.99
- nvidia-cuda-runtime-cu11==11.7.99
- nvidia-cudnn-cu11==8.5.0.96
- nvidia-cufft-cu11==10.9.0.58
- nvidia-curand-cu11==10.2.10.91
- nvidia-cusolver-cu11==11.4.0.1
- nvidia-cusparse-cu11==11.7.4.91
- nvidia-nccl-cu11==2.14.3
- nvidia-nvtx-cu11==11.7.91
- ome-types==0.5.1.post1
- ome-zarr==0.8.3
- opencv-python==4.8.1.78
- orjson==3.9.10
- partd==1.4.2
- plotly==5.23.0
- pooch==1.8.2
- progressbar2==4.2.0
- pydantic==2.5.2
- pydantic-compat==0.1.2
- pydantic-core==2.14.5
- pydicom==2.4.3
- pydub==0.25.1
- pynetdicom==1.5.7
- python-magic==0.4.27
- python-multipart==0.0.6
- python-utils==3.8.1
- pywavelets==1.5.0
- quilt3==5.4.0
- referencing==0.32.0
- regex==2024.7.24
- requests-futures==1.0.0
- resource-backed-dask-array==0.1.0
- rich==13.7.0
- rpds-py==0.13.2
- s3fs==2023.6.0
- s3transfer
- safetensors==0.4.4
- scikit-build==0.17.6
- scikit-image==0.19.3
- semantic-version==2.10.0
- simpleitk==2.3.1
- sniffio==1.3.0
- sortedcontainers==2.4.0
- soupsieve==2.5
- spacy==3.7.2
- starlette==0.27.0
- tblib==3.0.0
- tenacity==8.2.3
- termcolor==2.4.0
- thinc==8.2.1
- tifffile==2023.2.28
- tokenizers==0.19.1
- tomlkit==0.12.0
- toolz==0.12.0
- torchio==0.18.91
- transformers==4.44.2
- typing-extensions==4.9.0
- uvicorn==0.24.0.post1
- weasel==0.3.4
- websockets==11.0.3
- wrapt==1.16.0
- xarray==2024.3.0
- xlrd==2.0.1
- xmlschema==3.3.1
- xnat==0.5.3
- xsdata==24.3.1
- yarl==1.9.4
- zarr==2.15.0
- zict==3.0.0
- zipp==3.17.0
prefix: /home/biagio/miniconda3/envs/bioMONAI-env