_pkgdown.yml

url: https://nmautoverse.github.io/NMdata/
template:
  opengraph:
    image:
      src: man/figures/apple-touch-icon-180x180.png
      alt: Efficient data preparation, consistency-checking and post-processing in
        PK/PD modeling
  includes:
    after_body: |
      <script data-goatcounter="https://nmdata.goatcounter.com/count"
        async src="//gc.zgo.at/count.js"></script>
navbar:
  structure:
    left:
    - home
    - articles
    - cheatsheet
    - reference
    - news
    - github
    right: github
  components:
    home:
      title: Efficient data preparation, consistency-checking and post-processing
        in PK/PD modeling
      desc: |
        Efficient and fast tools for preparation, checking and post-processing of data in PK/PD modeling and pharmacometrics, with focus on use of NONMEM. Save time and avoid time-consuming errors. Implemented in data.table, but integratable with base and dplyr and tidyverse.
      icon: fas fa-home fa-lg
      href: index.html
    articles:
      text: Vignettes
      menu:
      - text: Cheat Sheet
        href: https://htmlpreview.github.io/?https://github.com/nmautoverse/NMdata/blob/master/vignettes/NMdata-cheat.html
      - text: 'NMscanData: find and combine all output and input data'
        href: articles/NMscanData.html
      - text: Data Preparation Tools
        href: articles/DataPrepare.html
      - text: FAQ
        href: articles/NMdata-FAQ.html
reference:
- title: Configuration
  desc: Configure NMdata behaviour
  contents: NMdataConf
- title: Data Preparation
  desc: Functions for preparation of PK/PD data sets
  contents:
  - NMorderColumns
  - compareCols
  - listMissings
  - uniquePresent
  - mergeCheck
  - renameByContents
  - flagsAssign
  - flagsCount
  - addTAPD
  - NMexpandDoses
  - editCharCols
- title: Write data
  desc: Write data and edit update NONMEM control streams
  contents:
  - NMwriteData
  - NMgenText
  - NMstamp
  - NMwriteSection
  - NMreplaceDataFile
  - colLabels
- title: Retrieve NONMEM data
  desc: Functions for retrieving NONMEM input and output data
  contents:
  - NMscanData
  - NMscanMultiple
  - NMscanTables
  - NMscanInput
  - NMreadCov
  - NMreadCsv
  - NMreadExt
  - NMreadPhi
  - NMreadShk
  - NMreadTab
  - NMreadParsText
  - NMrelate
  - NMinfo
  - addOmegaCorr
- title: Checking and Debugging
  desc: Functions for checking data and input control streams
  contents:
  - NMcheckColnames
  - NMcheckData
- title: Programming
  desc: Additional functions for programming
  contents:
  - cc
  - cl
  - dt2mat
  - mat2dt
  - egdt
  - dims
  - findCovs
  - findVars
  - fnAppend
  - fnExtension
  - is.NMdata
  - unNMdata
  - NMisNumeric
  - NMreadSection
  - NMextractDataFile
  - NMextractText
  - NMdataOperations
  - tmpcol
- title: Misc
  desc: Miscellaneous
  contents:
  - summary.NMdata
  - print.summary_NMdata
news:
  text: News
  href: news/index.html
github:
  icon: fab fa-github fa-lg
  href: https://github.com/nmautoverse/NMdata
cheatsheet:
  text: CheatSheet
  href: https://htmlpreview.github.io/?https://github.com/nmautoverse/NMdata/blob/master/devel/NMdata-cheat.html