diff --git a/CHANGELOG.md b/CHANGELOG.md index 961ceee..8220413 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,4 +1,4 @@ -Version 0.2 - September 3, 2011 +Version 0.2 - September 3, 2016 ----------- Version 0.2 of WASP is a major update to the code, @@ -8,21 +8,21 @@ strongly recommended that users switch to this version of the pipline. Changes include: - * re-wrote mapping scripts to make simpler and more modular - * re-wrote mapping test scripts and added of many tests - * fixed several mapping pipeline bugs related to paired-end reads - * find_intersecting_snps.py window size no longer required (is now +* re-wrote mapping scripts to make simpler and more modular +* re-wrote mapping test scripts and added of many tests +* fixed several mapping pipeline bugs related to paired-end reads +* find_intersecting_snps.py window size no longer required (is now unlimited) - * find_intersecting_snps.py can now take HDF5 files as input - * find_intersecting_snps.py can now consider only haplotypes +* find_intersecting_snps.py can now take HDF5 files as input +* find_intersecting_snps.py can now consider only haplotypes present in samples, rather than all possible allelic combinations of SNPs overlapping reads. - * added get_as_counts.py script that outputs allele-specific read +* added get_as_counts.py script that outputs allele-specific read counts at all polymorphic SNPs. - * snp2h5 now records sample info in output HDF5 files - * improved speed of many CHT pipeline steps - * improved stability of CHT dispersion parameter estimation - * added Snakemake workflows for both mapping and CHT pipelines +* snp2h5 now records sample info in output HDF5 files +* improved speed of many CHT pipeline steps +* improved stability of CHT dispersion parameter estimation +* added Snakemake workflows for both mapping and CHT pipelines Version 0.1