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Enforce standardised orientation #293

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adamltyson opened this issue May 16, 2024 · 4 comments
Closed

Enforce standardised orientation #293

adamltyson opened this issue May 16, 2024 · 4 comments
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enhancement New feature or request

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@adamltyson
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A while ago we decided to not bother with transform_to_bg, but some atlases are still not in the standard asr orientation. Atlas should be regenerated in this orientation, and all functionality related to transform_to_bg removed.

Related to #213
@adamltyson adamltyson added the enhancement New feature or request label May 16, 2024
@adamltyson adamltyson mentioned this issue Jul 22, 2024
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@adamltyson
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@brainglobe/active-devs do we have any atlases that aren't asr now? If not, shall we document this orientation as a requirement and then close this issue?

@alessandrofelder
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do we have any atlases that aren't asr now?

@viktorpm would probably know best?

@viktorpm
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All the ones on GIN should be in asr.

@alessandrofelder
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Fixed then 🎉

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@alessandrofelder @adamltyson @viktorpm