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broadinstitute · Jan 9, 2024 · 02ba77d · 02ba77d
1 parent 846db64
commit 02ba77d
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Showing 2 changed files with 614 additions and 578 deletions.
diff --git a/RNA_CCLE.ipynb b/RNA_CCLE.ipynb
@@ -190,6 +190,30 @@
     "# Fusion post processing"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import pandas as pd\n",
+    "\n",
+    "old_fusion_fn = \"\"\n",
+    "new_fusion_fn = \"\"\n",
+    "\n",
+    "new = pd.read_csv(new_fusion_fn, sep='\\t')\n",
+    "old = pd.read_csv(old_fusion_fn, sep='\\t')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "pd.concat([old, new], ignore_index=True).to_csv(\"fusion_stitched_\" + constants.SAMPLESETNAME + \".csv\", sep='\\t')"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": null,