From 19ea61041fc94bd42a998f5169bfa768def5f77d Mon Sep 17 00:00:00 2001 From: VJalili Date: Wed, 31 Jan 2024 10:10:25 -0500 Subject: [PATCH] do not run module metrics by default # This is due to the interface requirements, as when the default value is true, it requires few other optional arguments to be set. However, this is not clear to a user when running this workflow, and the workflow will fail if the arguments are not provided with less intuitive error messages. --- wdl/GatherSampleEvidence.wdl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/wdl/GatherSampleEvidence.wdl b/wdl/GatherSampleEvidence.wdl index f144bef4a..31258d4f9 100644 --- a/wdl/GatherSampleEvidence.wdl +++ b/wdl/GatherSampleEvidence.wdl @@ -81,7 +81,7 @@ workflow GatherSampleEvidence { # Module metrics parameters # Run module metrics workflow at the end - on by default - Boolean run_module_metrics = true + Boolean run_module_metrics = false File? primary_contigs_fai # required if run_module_metrics = true String? sv_pipeline_base_docker # required if run_module_metrics = true File? baseline_manta_vcf # baseline files are optional for metrics workflow