{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":206814729,"defaultBranch":"master","name":"viral-assemble","ownerLogin":"broadinstitute","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2019-09-06T14:46:02.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/393552?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1722533008.0","currentOid":""},"activityList":{"items":[{"before":"58c1296fd31ee1cfb2009ce05ecfeae3ff433021","after":null,"ref":"refs/heads/ct-coverage-update","pushedAt":"2024-08-01T17:21:39.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"}},{"before":"55f6a7901bf8c4b316205fccd9ee013ba6611e59","after":null,"ref":"refs/heads/dp-scaffold","pushedAt":"2024-08-01T16:59:50.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"}},{"before":"29d0aaf6d22874f1adff8671533b9369db4d3a6e","after":"02f2676bace721854cc7cf4fb10aaf5935b494c7","ref":"refs/heads/master","pushedAt":"2024-08-01T16:59:47.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"Merge pull request #46 from broadinstitute/dp-scaffold\n\ndocbuild fixes, viral-core bump","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2442910292\" data-permission-text=\"Title is private\" data-url=\"https://github.com/broadinstitute/viral-assemble/issues/46\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/broadinstitute/viral-assemble/pull/46/hovercard\" href=\"https://github.com/broadinstitute/viral-assemble/pull/46\">#46</a> from broadinstitute/dp-scaffold"}},{"before":"caace0deddf07af4b7a3a01082444740c9b4e65e","after":"55f6a7901bf8c4b316205fccd9ee013ba6611e59","ref":"refs/heads/dp-scaffold","pushedAt":"2024-08-01T16:43:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"bump viral-core to 2.3.2","shortMessageHtmlLink":"bump viral-core to 2.3.2"}},{"before":"2cfc56ecb2efebcce310909fda28327c1c4b5c2b","after":"caace0deddf07af4b7a3a01082444740c9b4e65e","ref":"refs/heads/dp-scaffold","pushedAt":"2024-08-01T16:41:35.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"Revert \"add new test (expected to fail at first)\"\n\nThis reverts commit 81836abfc7301a88e3668fc95b7e1694c8956ca5.","shortMessageHtmlLink":"Revert \"add new test (expected to fail at first)\""}},{"before":"29d0aaf6d22874f1adff8671533b9369db4d3a6e","after":"2cfc56ecb2efebcce310909fda28327c1c4b5c2b","ref":"refs/heads/dp-scaffold","pushedAt":"2024-08-01T14:16:49.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"docbuild fixes","shortMessageHtmlLink":"docbuild fixes"}},{"before":"3aa29ec258363d0f969f9e754b7c4533e98cd21a","after":"29d0aaf6d22874f1adff8671533b9369db4d3a6e","ref":"refs/heads/dp-scaffold","pushedAt":"2024-07-25T14:56:12.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"Merge pull request #45 from broadinstitute/ct-coverage-update\n\nupdate coveralls action; bump actions python to 3.10","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2333512617\" data-permission-text=\"Title is private\" data-url=\"https://github.com/broadinstitute/viral-assemble/issues/45\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/broadinstitute/viral-assemble/pull/45/hovercard\" href=\"https://github.com/broadinstitute/viral-assemble/pull/45\">#45</a> from broadinstitute/ct-coverage-update"}},{"before":"6178d2ec57f61638edd96bf35bead4a405ca91b8","after":"29d0aaf6d22874f1adff8671533b9369db4d3a6e","ref":"refs/heads/master","pushedAt":"2024-06-04T14:52:50.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"tomkinsc","name":"Chris Tomkins-Tinch","path":"/tomkinsc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53064?s=80&v=4"},"commit":{"message":"Merge pull request #45 from broadinstitute/ct-coverage-update\n\nupdate coveralls action; bump actions python to 3.10","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2333512617\" data-permission-text=\"Title is private\" data-url=\"https://github.com/broadinstitute/viral-assemble/issues/45\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/broadinstitute/viral-assemble/pull/45/hovercard\" href=\"https://github.com/broadinstitute/viral-assemble/pull/45\">#45</a> from broadinstitute/ct-coverage-update"}},{"before":"6178d2ec57f61638edd96bf35bead4a405ca91b8","after":"58c1296fd31ee1cfb2009ce05ecfeae3ff433021","ref":"refs/heads/ct-coverage-update","pushedAt":"2024-06-04T13:16:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"tomkinsc","name":"Chris Tomkins-Tinch","path":"/tomkinsc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53064?s=80&v=4"},"commit":{"message":"update coveralls action; bump actions python to 3.10","shortMessageHtmlLink":"update coveralls action; bump actions python to 3.10"}},{"before":null,"after":"6178d2ec57f61638edd96bf35bead4a405ca91b8","ref":"refs/heads/ct-coverage-update","pushedAt":"2024-06-04T13:16:16.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"tomkinsc","name":"Chris Tomkins-Tinch","path":"/tomkinsc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53064?s=80&v=4"},"commit":{"message":"Merge pull request #44 from broadinstitute/dp-scaffold\n\nskani updates","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2214190941\" data-permission-text=\"Title is private\" data-url=\"https://github.com/broadinstitute/viral-assemble/issues/44\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/broadinstitute/viral-assemble/pull/44/hovercard\" href=\"https://github.com/broadinstitute/viral-assemble/pull/44\">#44</a> from broadinstitute/dp-scaffold"}},{"before":"f88c8f9f0898392bab288c68937a8ae74a78baa1","after":"6178d2ec57f61638edd96bf35bead4a405ca91b8","ref":"refs/heads/master","pushedAt":"2024-03-28T21:35:36.000Z","pushType":"pr_merge","commitsCount":9,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"Merge pull request #44 from broadinstitute/dp-scaffold\n\nskani updates","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2214190941\" data-permission-text=\"Title is private\" data-url=\"https://github.com/broadinstitute/viral-assemble/issues/44\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/broadinstitute/viral-assemble/pull/44/hovercard\" href=\"https://github.com/broadinstitute/viral-assemble/pull/44\">#44</a> from broadinstitute/dp-scaffold"}},{"before":"28aed63cba32153a8f474dc75f8b6c7dc8395ba0","after":"3aa29ec258363d0f969f9e754b7c4533e98cd21a","ref":"refs/heads/dp-scaffold","pushedAt":"2024-03-28T21:14:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"update expected order","shortMessageHtmlLink":"update expected order"}},{"before":"895a5573129e4d5568e6a293048ff718f3032016","after":"28aed63cba32153a8f474dc75f8b6c7dc8395ba0","ref":"refs/heads/dp-scaffold","pushedAt":"2024-03-28T20:39:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"re-order skani output tsvs by ANI*Total_bases_covered","shortMessageHtmlLink":"re-order skani output tsvs by ANI*Total_bases_covered"}},{"before":"2edbb6e6bd078bfb229affd945301e9fd8d94299","after":"895a5573129e4d5568e6a293048ff718f3032016","ref":"refs/heads/dp-scaffold","pushedAt":"2024-03-28T20:37:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"clean up fasta headers in unit test to compare to expected","shortMessageHtmlLink":"clean up fasta headers in unit test to compare to expected"}},{"before":"3b470715ef6e8c02cbceed8db39857a2d08724cf","after":"2edbb6e6bd078bfb229affd945301e9fd8d94299","ref":"refs/heads/dp-scaffold","pushedAt":"2024-03-28T18:25:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"fix test imports","shortMessageHtmlLink":"fix test imports"}},{"before":"3f54202738bf02f54167ce3b2c934b65ff2b9570","after":"3b470715ef6e8c02cbceed8db39857a2d08724cf","ref":"refs/heads/dp-scaffold","pushedAt":"2024-03-28T18:12:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"fix python path","shortMessageHtmlLink":"fix python path"}},{"before":"8783d263148045040c020cca5e036710ee373865","after":"3f54202738bf02f54167ce3b2c934b65ff2b9570","ref":"refs/heads/dp-scaffold","pushedAt":"2024-03-28T17:27:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"add some (failing) tests to require a certain output order from skani","shortMessageHtmlLink":"add some (failing) tests to require a certain output order from skani"}},{"before":"3045822f57bf31f7ecfca58a88b04dab030035cd","after":"8783d263148045040c020cca5e036710ee373865","ref":"refs/heads/dp-scaffold","pushedAt":"2024-03-28T14:11:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"new default params for skani are able to detect across lasv more","shortMessageHtmlLink":"new default params for skani are able to detect across lasv more"}},{"before":null,"after":"3045822f57bf31f7ecfca58a88b04dab030035cd","ref":"refs/heads/dp-scaffold","pushedAt":"2024-03-28T13:44:26.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"change default m and c for skani to even lower values based on experimentation on rhino/entero genomes","shortMessageHtmlLink":"change default m and c for skani to even lower values based on experi…"}},{"before":"04c0f947c2fafe8151555da1138c9a794260761f","after":null,"ref":"refs/heads/dp-scaffold","pushedAt":"2024-03-20T20:18:25.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"}},{"before":"b986d1a84cfd040925921822522d57a5aaafbc59","after":"f88c8f9f0898392bab288c68937a8ae74a78baa1","ref":"refs/heads/master","pushedAt":"2024-03-20T20:18:20.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"Merge pull request #43 from broadinstitute/dp-scaffold\n\nexpose common parameters for skani at argparse level","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2198367839\" data-permission-text=\"Title is private\" data-url=\"https://github.com/broadinstitute/viral-assemble/issues/43\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/broadinstitute/viral-assemble/pull/43/hovercard\" href=\"https://github.com/broadinstitute/viral-assemble/pull/43\">#43</a> from broadinstitute/dp-scaffold"}},{"before":"a4569506f427a841e0f73f2a856745173c46d931","after":"04c0f947c2fafe8151555da1138c9a794260761f","ref":"refs/heads/dp-scaffold","pushedAt":"2024-03-20T20:08:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"add default vals to python main funs","shortMessageHtmlLink":"add default vals to python main funs"}},{"before":null,"after":"a4569506f427a841e0f73f2a856745173c46d931","ref":"refs/heads/dp-scaffold","pushedAt":"2024-03-20T19:09:08.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"expose more knobs for skani, change default -c from 30 to 20 and -s to 50 from 85 otherwise keep as before","shortMessageHtmlLink":"expose more knobs for skani, change default -c from 30 to 20 and -s t…"}},{"before":"f37a5cf6a2f4c03f837b74156425aef80f4b9b2f","after":null,"ref":"refs/heads/dp-scaffold","pushedAt":"2024-03-19T23:01:18.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"}},{"before":"9c862b95dd584a236c72b3022e21d1e2ef55f0d3","after":"b986d1a84cfd040925921822522d57a5aaafbc59","ref":"refs/heads/master","pushedAt":"2024-03-19T22:13:27.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"Merge pull request #42 from broadinstitute/dp-scaffold\n\nbugfix: make skani dist tolerate empty input","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2196068185\" data-permission-text=\"Title is private\" data-url=\"https://github.com/broadinstitute/viral-assemble/issues/42\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/broadinstitute/viral-assemble/pull/42/hovercard\" href=\"https://github.com/broadinstitute/viral-assemble/pull/42\">#42</a> from broadinstitute/dp-scaffold"}},{"before":"e76674881317baed7e2746421a03ebc500612e77","after":"f37a5cf6a2f4c03f837b74156425aef80f4b9b2f","ref":"refs/heads/dp-scaffold","pushedAt":"2024-03-19T21:34:51.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"Merge remote-tracking branch 'origin/master' into dp-scaffold","shortMessageHtmlLink":"Merge remote-tracking branch 'origin/master' into dp-scaffold"}},{"before":null,"after":"e76674881317baed7e2746421a03ebc500612e77","ref":"refs/heads/dp-scaffold","pushedAt":"2024-03-19T20:51:47.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"add test for failure","shortMessageHtmlLink":"add test for failure"}},{"before":"bd0c3c1b752f35077cd338ea8d64bfd5e230275f","after":null,"ref":"refs/heads/dp-scaffold","pushedAt":"2024-03-19T19:54:01.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"}},{"before":"96335ee6a5ccee6313c036271c2a590c190d4565","after":"9c862b95dd584a236c72b3022e21d1e2ef55f0d3","ref":"refs/heads/master","pushedAt":"2024-03-19T19:53:57.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"Merge pull request #40 from broadinstitute/dp-scaffold\n\nbugfix: assemble.skani_contigs_to_refs filtered file was missing header","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2195854175\" data-permission-text=\"Title is private\" data-url=\"https://github.com/broadinstitute/viral-assemble/issues/40\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/broadinstitute/viral-assemble/pull/40/hovercard\" href=\"https://github.com/broadinstitute/viral-assemble/pull/40\">#40</a> from broadinstitute/dp-scaffold"}},{"before":null,"after":"bd0c3c1b752f35077cd338ea8d64bfd5e230275f","ref":"refs/heads/dp-scaffold","pushedAt":"2024-03-19T19:40:29.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dpark01","name":"Daniel Park","path":"/dpark01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8513746?s=80&v=4"},"commit":{"message":"bugfix output","shortMessageHtmlLink":"bugfix output"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEj2Z83wA","startCursor":null,"endCursor":null}},"title":"Activity · broadinstitute/viral-assemble"}