{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":206814830,"defaultBranch":"master","name":"viral-classify","ownerLogin":"broadinstitute","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2019-09-06T14:46:35.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/393552?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1724451963.0","currentOid":""},"activityList":{"items":[{"before":"bd508589f75e47d63506f8e3588993eaa4fc86d0","after":null,"ref":"refs/heads/ct-update-viral-core-2.3.3","pushedAt":"2024-08-23T22:22:56.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"tomkinsc","name":"Chris Tomkins-Tinch","path":"/tomkinsc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53064?s=80&v=4"}},{"before":"cfbda7fd883b86d6b8473885a83e5ea36a574429","after":"e511a78b3c5e06df539cc73b139c9bbca43e1e48","ref":"refs/heads/master","pushedAt":"2024-08-23T22:22:49.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"tomkinsc","name":"Chris Tomkins-Tinch","path":"/tomkinsc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53064?s=80&v=4"},"commit":{"message":"Merge pull request #50 from broadinstitute/ct-update-viral-core-2.3.3\n\nbump viral-core version 2.3.1 -> 2.3.3","shortMessageHtmlLink":"Merge pull request #50 from broadinstitute/ct-update-viral-core-2.3.3"}},{"before":"bdfe3ebf1ffcb92d42079ad608072783b2bcd1a3","after":"bd508589f75e47d63506f8e3588993eaa4fc86d0","ref":"refs/heads/ct-update-viral-core-2.3.3","pushedAt":"2024-08-23T21:56:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"tomkinsc","name":"Chris Tomkins-Tinch","path":"/tomkinsc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53064?s=80&v=4"},"commit":{"message":"update docs build requirements","shortMessageHtmlLink":"update docs build requirements"}},{"before":"2eead7b65d919c42824ba418a3685f1ef440f4a3","after":"bdfe3ebf1ffcb92d42079ad608072783b2bcd1a3","ref":"refs/heads/ct-update-viral-core-2.3.3","pushedAt":"2024-08-23T21:44:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"tomkinsc","name":"Chris Tomkins-Tinch","path":"/tomkinsc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53064?s=80&v=4"},"commit":{"message":"comment out lxml.html.clean import\n\n lxml-html-clean dependency since it currently breaks tests due to being migrated to a separate module. We're not currently using it, so omitting the import is fine. Should its functionality be needed again, the conda package \"lxml-html-clean\" will need to be installed. See:\nhttps://bugs.launchpad.net/lxml/+bug/1958539\nhttps://github.com/psf/requests-html/issues/558","shortMessageHtmlLink":"comment out lxml.html.clean import"}},{"before":null,"after":"2eead7b65d919c42824ba418a3685f1ef440f4a3","ref":"refs/heads/ct-update-viral-core-2.3.3","pushedAt":"2024-08-23T21:19:57.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"tomkinsc","name":"Chris Tomkins-Tinch","path":"/tomkinsc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53064?s=80&v=4"},"commit":{"message":"bump viral-core version 2.3.1 -> 2.3.3","shortMessageHtmlLink":"bump viral-core version 2.3.1 -> 2.3.3"}},{"before":"aaadbd54f9b55a8cc24e930c09d31e69699f762d","after":"919713c8504e720e085c6cbe6023b241f8bf8fdb","ref":"refs/heads/fn_blast","pushedAt":"2024-06-25T15:27:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"changes made to maximized memory function","shortMessageHtmlLink":"changes made to maximized memory function"}},{"before":"eaf2da2f3bfc2828dcb86a9fdfe7373b764e5509","after":"aaadbd54f9b55a8cc24e930c09d31e69699f762d","ref":"refs/heads/fn_blast","pushedAt":"2024-06-13T18:13:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"changing the calculate chunking to consider tight memory function","shortMessageHtmlLink":"changing the calculate chunking to consider tight memory function"}},{"before":"9f4664ba8ece3bee15a25b0970125de29161b43d","after":"eaf2da2f3bfc2828dcb86a9fdfe7373b764e5509","ref":"refs/heads/fn_blast","pushedAt":"2024-06-11T18:03:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"revised calculate_chunking funciton with imporved distribution logic that prevents significantly smaller than other chunks","shortMessageHtmlLink":"revised calculate_chunking funciton with imporved distribution logic …"}},{"before":"8adaea995b440db980d3ec8266fd0c7bb538d2b3","after":"9f4664ba8ece3bee15a25b0970125de29161b43d","ref":"refs/heads/fn_blast","pushedAt":"2024-06-11T17:43:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"added some tweaks to the calculate_chunking method","shortMessageHtmlLink":"added some tweaks to the calculate_chunking method"}},{"before":"d2b2e5aaa446ee3e9912379b70b51e006f401c22","after":"8adaea995b440db980d3ec8266fd0c7bb538d2b3","ref":"refs/heads/fn_blast","pushedAt":"2024-06-11T15:36:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"updating first unittest which looks at maximization of memory:","shortMessageHtmlLink":"updating first unittest which looks at maximization of memory:"}},{"before":"fa589fc00a7d685e98bdbfe3e2355fdc2ebc44d0","after":"d2b2e5aaa446ee3e9912379b70b51e006f401c22","ref":"refs/heads/fn_blast","pushedAt":"2024-06-11T14:26:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"cleaning up edits","shortMessageHtmlLink":"cleaning up edits"}},{"before":"623df8427f443fe43a17678aaa801bbe51e61110","after":"fa589fc00a7d685e98bdbfe3e2355fdc2ebc44d0","ref":"refs/heads/fn_blast","pushedAt":"2024-06-08T20:52:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"adding unit test for calculate chunking","shortMessageHtmlLink":"adding unit test for calculate chunking"}},{"before":"52e319d925fb78ad36b0218f384982b6c90cc274","after":"fa485f508a453878f4d69b65c4c9d55d3fdc7e94","ref":"refs/heads/fn_cleaned_blast","pushedAt":"2024-06-06T00:59:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"Just some fixes to blast.py file, such as removing cProfile","shortMessageHtmlLink":"Just some fixes to blast.py file, such as removing cProfile"}},{"before":"cfbda7fd883b86d6b8473885a83e5ea36a574429","after":"52e319d925fb78ad36b0218f384982b6c90cc274","ref":"refs/heads/fn_cleaned_blast","pushedAt":"2024-06-06T00:39:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"Updating new scripts to branch","shortMessageHtmlLink":"Updating new scripts to branch"}},{"before":null,"after":"cfbda7fd883b86d6b8473885a83e5ea36a574429","ref":"refs/heads/fn_cleaned_blast","pushedAt":"2024-06-05T23:55:26.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"Merge pull request #48 from broadinstitute/ct-update-testing\n\nupdate coveralls action; bump actions python to 3.10","shortMessageHtmlLink":"Merge pull request #48 from broadinstitute/ct-update-testing"}},{"before":"1d9606aa9338781460ef1c3ec4c172c6da9df4c6","after":"cfbda7fd883b86d6b8473885a83e5ea36a574429","ref":"refs/heads/master","pushedAt":"2024-06-04T14:52:57.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"tomkinsc","name":"Chris Tomkins-Tinch","path":"/tomkinsc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53064?s=80&v=4"},"commit":{"message":"Merge pull request #48 from broadinstitute/ct-update-testing\n\nupdate coveralls action; bump actions python to 3.10","shortMessageHtmlLink":"Merge pull request #48 from broadinstitute/ct-update-testing"}},{"before":"046b85109be97f98b80fb929bebfea2c75e591d2","after":"b00b82bb87cce41899608e6ef77d15e5ce53b135","ref":"refs/heads/ct-update-testing","pushedAt":"2024-06-04T13:18:34.000Z","pushType":"push","commitsCount":18,"pusher":{"login":"tomkinsc","name":"Chris Tomkins-Tinch","path":"/tomkinsc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53064?s=80&v=4"},"commit":{"message":"Merge branch 'master' into ct-update-testing","shortMessageHtmlLink":"Merge branch 'master' into ct-update-testing"}},{"before":null,"after":"046b85109be97f98b80fb929bebfea2c75e591d2","ref":"refs/heads/ct-update-testing","pushedAt":"2024-06-04T13:18:18.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"tomkinsc","name":"Chris Tomkins-Tinch","path":"/tomkinsc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53064?s=80&v=4"},"commit":{"message":"update coveralls action; bump actions python to 3.10","shortMessageHtmlLink":"update coveralls action; bump actions python to 3.10"}},{"before":"59e59c480e7c1e1bff7315467dfce2fcb6b68d8b","after":"623df8427f443fe43a17678aaa801bbe51e61110","ref":"refs/heads/fn_blast","pushedAt":"2024-05-30T17:53:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"cleaned up code","shortMessageHtmlLink":"cleaned up code"}},{"before":"71ece3b2a6114dc0a53409e4b541ea0010981d77","after":"59e59c480e7c1e1bff7315467dfce2fcb6b68d8b","ref":"refs/heads/fn_blast","pushedAt":"2024-05-17T20:09:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"updating blast.py with prior commit and added parameters","shortMessageHtmlLink":"updating blast.py with prior commit and added parameters"}},{"before":"b6d156926a543aa8dabf6361e9520661e5b4913d","after":"71ece3b2a6114dc0a53409e4b541ea0010981d77","ref":"refs/heads/fn_blast","pushedAt":"2024-05-17T19:32:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"updating dockerfile","shortMessageHtmlLink":"updating dockerfile"}},{"before":"e5f3b781e76443838455a26c81554c3abc7f35ce","after":"b6d156926a543aa8dabf6361e9520661e5b4913d","ref":"refs/heads/fn_blast","pushedAt":"2024-05-17T19:29:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"printing chunk sizes","shortMessageHtmlLink":"printing chunk sizes"}},{"before":"e993d4df6a7bd1e85de62af8a06354b383e49c78","after":"e5f3b781e76443838455a26c81554c3abc7f35ce","ref":"refs/heads/fn_blast","pushedAt":"2024-05-17T19:13:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"fixing blast.py","shortMessageHtmlLink":"fixing blast.py"}},{"before":"94f42188790d69be4644e5196b1df49bb7a4cb29","after":"e993d4df6a7bd1e85de62af8a06354b383e49c78","ref":"refs/heads/fn_blast","pushedAt":"2024-05-17T19:02:09.000Z","pushType":"push","commitsCount":30,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"updated chunking scheme","shortMessageHtmlLink":"updated chunking scheme"}},{"before":"1105aed66a4cb3c514a4993c992289ca0ab435c3","after":"94f42188790d69be4644e5196b1df49bb7a4cb29","ref":"refs/heads/fn_blast","pushedAt":"2024-05-15T11:16:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"changing taxidlist from string path to file","shortMessageHtmlLink":"changing taxidlist from string path to file"}},{"before":"bb6b8e62fb673fb08157fef5f3280fd34bf9dc1a","after":"1105aed66a4cb3c514a4993c992289ca0ab435c3","ref":"refs/heads/fn_blast","pushedAt":"2024-05-15T04:42:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"chunk_blast_hits","shortMessageHtmlLink":"chunk_blast_hits"}},{"before":"e28e8671c2ac19454e0bdf9cb7723008de5310ed","after":"bb6b8e62fb673fb08157fef5f3280fd34bf9dc1a","ref":"refs/heads/fn_blast","pushedAt":"2024-05-15T04:31:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"adding taxidlist logging to each layer","shortMessageHtmlLink":"adding taxidlist logging to each layer"}},{"before":"05a318950ebd2772bdd3c595cc6c0163c187215f","after":"e28e8671c2ac19454e0bdf9cb7723008de5310ed","ref":"refs/heads/fn_blast","pushedAt":"2024-05-15T02:59:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"adding taxidlist logging","shortMessageHtmlLink":"adding taxidlist logging"}},{"before":"bb8e71a5031c08131464bc79cab25aaaa3362e70","after":"05a318950ebd2772bdd3c595cc6c0163c187215f","ref":"refs/heads/fn_blast","pushedAt":"2024-05-15T02:17:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"adding taxon_filter","shortMessageHtmlLink":"adding taxon_filter"}},{"before":"ca3453689047edb437c5139a189fa57b04f60bb4","after":"bb8e71a5031c08131464bc79cab25aaaa3362e70","ref":"refs/heads/fn_blast","pushedAt":"2024-05-14T22:41:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"golu099","name":"Flavia","path":"/golu099","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/21211316?s=80&v=4"},"commit":{"message":"taking out logging config","shortMessageHtmlLink":"taking out logging config"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEosSBEwA","startCursor":null,"endCursor":null}},"title":"Activity · broadinstitute/viral-classify"}