v1.15.0

• Tabs in query page refactored and now part of cbioportal-frontend repo:
  • plots
  • network (inside iframe)
  • bookmarks
  • expression
• Updated MutationMapper tool to connect to Genome Nexus for annotating mutations on the fly
• Total Mutations and Fraction Genome Altered are available in plots tab
• Enhanced clinical attribute selector for Oncoprint, now showing sample counts per attribute

v1.14.1

• Fix oncoprint expression heatmap legend missing: cBioPortal/cbioportal#4584
• Show parenthesized content in OncoKB card: oncokb/oncokb#1274
• Use mutation effect from first OncoKB call: #1318
• Only download requested chromosomes in api-legacy/copynumbersegments endpoint: cBioPortal/cbioportal#4412
• show tick at 0 in enrichments plot (cBioPortal/cbioportal#4379)
• add description to fraction genome altered (cBioPortal/cbioportal#4477)
• Fix description of enrichments tab p-value (cBioPortal/cbioportal#4435)
• oncoprint change methylation heatmap color scale (https://github.com/cBioPortal/cbioportal-frontend/issues/1229)
• Add download options to vulcano plots on enrichments tab (cBioPortal/cbioportal#4381)
• Fix missing uniprot id in mutations tab (cBioPortal/cbioportal#4403)
• Remove extra log calculation for log ratio on enrichments tab (#1261)
• Show overlapping studies warning when selecting pancan studies with other TCGA studies n same cancer type (cBioPortal/cbioportal#4373)

v1.14.0

• New Feature: Merged Gene Tracks in Oncoprint (http://www.cbioportal.org/onco_query_lang_desc.jsp#merged-gene-tracks)
• Co-expression and Enrichment tabs moved to new architecture
• Multi-study query interface: populate case set selection based on sample lists in studies

v1.13.2

• Suppress OncoKB data fetch errors (#1204)

v1.13.1

• Oncoprint tracks indicating profiled status in queried profiles (#1167)
• Prevent alphabetical searching example queries list (#1177)
• Fix missing modify query button for subset of virtual study (#1176)
• Fix broken CN segments file (#1175)
• Enable searching for germline in protein change column (#1152)
• Open mycancergenome links in separate tab (#1188)
• Fix copy button behavior (#1190)
• Remove semicolon from custom news section (#1194)
• Don't show invalid allele count values e.g. N/A, undefined, -1 in mutations table (#1165)
• Remove dependency on pdb annotation service (use genomenexus.org instead) (#1068)
• Fix genomic overview when it contains . in the filename (#1094)
• Disallow geneless queries (#1207)

v1.13.0

• Query and delete virtual cohorts in the query interface for authenticated portals (#831)
• Fix tooltip arrow position in survival chart (#1051)
• Show germline mutations in oncoprint (#913)
• Fixes for gene sets (not used in public portal yet)
• Typescript 2.7

v1.12.2

• Oncoprint 'not profiled' improvements. We now only consider it N/P if not profiled by any selected profiles, including non-mutation. We show all this information in the tooltip: #1110.
• Similarly don't show a profile in "Not Profiled In" if its already in "Profiled In", this happens e.g. if one sample is and one sample isnt profiled in the same patient. #1150
• Use correct tumor field for OncoKB tumor type. Solves issue oncokb/oncokb#1034

v1.12.1

• Bug fixes

v1.12.0

• The sixth phase of the cBioPortal architectural upgrade is now complete: The Download tab has been moved to the new architecture.
• Added an option to download an SVG file on the Cancer Type Summary tab
• Cancer hotspots / 3d hotspots info now comes from genome nexus on mutations tab and patient view

v1.11.3

1. Change to survival tooltip style
2. Data downloads urls should target new download.cbioportal.org instead of github datahub.
3. On mutations tab count multiple mutations for the same patient only once (#962)
4. Show extra info on mutations tab when patients have multiple samples (#975)