v5.3.11

✨ Enhancements

• Feature/ch/10184 support patient filters sent via postdata @haynescd (cbioportal-frontend#4635)

📘 Documentation

• add statistical tests in GC in FAQ @jjgao (#10199)
• Update web-API-and-Clients.md @karissawhiting (#10209)
• Adding new features news @dippindots (#10149)
• Add AACR GENIE BPC tutorial videos playlist @ritikakundra (#10215)

🕵️‍♀️ Full commit logs

• Backend: v5.3.10...v5.3.11
• Frontend: cBioPortal/cbioportal-frontend@v5.3.10...v5.3.11

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.10

✨ Enhancements

• Hide reVUE when there is no reVUE mutations in the query @leexgh (cbioportal-frontend#4637)
• Study view KM plot: Updating tooltip and increasing threshold for compact mode @dippindots (cbioportal-frontend#4636)

🐛 Bug Fixes

• Fix add chart button so that it never overlaps tabs @alisman (cbioportal-frontend#4627)

👷‍♀️ Testing, Configuration & Deployment

• Fix localdb @alisman (cbioportal-frontend#4634)

🧰 Maintenance

• Remove redundant makeObservable call @aditygrg2 (cbioportal-frontend#4633)

🕵️‍♀️ Full commit logs

• Backend: v5.3.9...v5.3.10
• Frontend: cBioPortal/cbioportal-frontend@v5.3.9...v5.3.10

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.9

🐛 Bug Fixes

• Fix double click on gene query icon in study view @alisman (cbioportal-frontend#4626)

🎨 Style Tweaks

• Adjust toast settings on studyview @alisman (cbioportal-frontend#4628)

📘 Documentation

• extend File-Formats.md with mutational signature datatype @MatthijsPon (#10172)

🖊️ Data Importer & Validator

• Feature/10133 exclude clinical attributes with low priority @haynescd (#10156)

🧰 Maintenance

• ⚡ Update GenomeNexus Api sync @haynescd (cbioportal-frontend#4618)

🕵️‍♀️ Full commit logs

• Backend: v5.3.8...v5.3.9
• Frontend: cBioPortal/cbioportal-frontend@v5.3.8...v5.3.9

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.8

✨ Enhancements

• Add new "queue" gene icon to study view gene tables @alisman (cbioportal-frontend#4617)
• ✨ Add PatientIdentifiers URL Parameter @haynescd (cbioportal-frontend#4616)
• Add TCGA Pancan pathways to query selector @inodb (cbioportal-frontend#4610)

🐛 Bug Fixes

• Add profile filtering when adding Generic Entity IDs in Oncoprint @oplantalech @alisman (cbioportal-frontend#4596)

👷‍♀️ Testing, Configuration & Deployment

• update screenshots after oncokb change @alisman (cbioportal-frontend#4623)
• Fix integration test @dippindots (#10193)

🧰 Maintenance

• Update svg2pdf to fix broken Overlap charts download @dippindots (cbioportal-frontend#4601)

🕵️‍♀️ Full commit logs

• Backend: v5.3.7...v5.3.8
• Frontend: cBioPortal/cbioportal-frontend@v5.3.7...v5.3.8

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.7

🧬 Features

• Structural variants tab on results view (phase 1) @fuzhaoyuan (cbioportal-frontend#4588)

✨ Enhancements

• 🔧 Add configurability for StudyDownloadUrl @haynescd (cbioportal-frontend#4602)
• Filter Clinical Attribute Charts when priority is -1 @haynescd (cbioportal-frontend#4598)
• Add a configurable legend to timeline tracks @alisman (cbioportal-frontend#4593)

🐛 Bug Fixes

• Correct sample icon coloring on the patient view @gblaih (cbioportal-frontend#4613)
• Fix broken civic links @onursumer (cbioportal-frontend#4612)
• Fix study tag search when no studies available @BasLee (#10164)

👷‍♀️ Testing, Configuration & Deployment

• Disable keycloak caching for localdb tests @dippindots (cbioportal-frontend#4615)

📘 Documentation

• Documentation markdown fixes @justinjao (#10186)
• add jeremy to about page @tmazor (#10166)

🧰 Maintenance

• Add dsnparse Python requirement @pvannierop (#10165)

🕵️‍♀️ Full commit logs

• Backend: v5.3.6...v5.3.7
• Frontend: cBioPortal/cbioportal-frontend@v5.3.6...v5.3.7

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.6

🧬 Features

• Add revue icon for revue variants @leexgh (cbioportal-frontend#4589)

✨ Enhancements

• Download data from study view treatment tables @Player256 (cbioportal-frontend#4595)
• 🔧 Add Configurable Param for max number of samples in study vi… @haynescd (cbioportal-frontend#4587)
• 🔧 Add StudyDownloadUrl to portal.properties @haynescd (#10143)

🐛 Bug Fixes

• Import image as source for revue logo @leexgh (cbioportal-frontend#4606)
• Check undefined revue for mutation type and protein change column @leexgh (cbioportal-frontend#4605)
• Check undefined annotation_summary when fetching revue @leexgh (cbioportal-frontend#4604)

🏎 Performance Tweaks

• Study view km plot optimization @dippindots (cbioportal-frontend#4520)

📘 Documentation

• Add tutorials from others @inodb (#10142)

🎨 Style Tweaks

• Optimize Vue icon image @alisman (cbioportal-frontend#4608)

🕵️‍♀️ Full commit logs

• Backend: v5.3.5...v5.3.6
• Frontend: cBioPortal/cbioportal-frontend@v5.3.5...v5.3.6

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.5

🐛 Bug Fixes

• Filter SV by custom driver annotations in oncoprint and study page @BasLee (cbioportal-frontend#4552)
• Fix oncokb card for intragenic gene in mutation table @alisman (cbioportal-frontend#4594)
• 🐛 Add Missing Operations Button Txt to Clinical Event Type Table @haynescd (cbioportal-frontend#4592)

👷‍♀️ Testing, Configuration & Deployment

• 🔧 Add Configuration Properties for study view summary limits @haynescd (#10128)

🎨 Style Tweaks

• Tweak style of oncoprint controls @aditygrg2 (cbioportal-frontend#4548)

🧰 Maintenance

• Update api clients @alisman (cbioportal-frontend#4591)

🕵️‍♀️ Full commit logs

• Backend: v5.3.4...v5.3.5
• Frontend: cBioPortal/cbioportal-frontend@v5.3.4...v5.3.5

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.4

🧬 Enhancements

• Impl. study search on Query Page using 'study tags' @BasLee cBioPortal/cbioportal-frontend#4571
• Improve Oncoprint Add-track UI @aditygrg2 cBioPortal/cbioportal-frontend#4542
• Add studyId to CancerStudyTag entity @BasLee (#10116)

🐛 Bug Fixes

• Hide defunct download tab on home page @gblaih cBioPortal/cbioportal-frontend#4585
• Do not call next study view filter when no samples left @pvannierop (#10124)

🧰 Maintenance

• Update yarn lock file to fix build error @alisman cBioPortal/cbioportal-frontend#4584
• [Snyk] Security upgrade xml2js from 0.4.23 to 0.5.0 @oplantalech cBioPortal/cbioportal-frontend#4578

📘 Documentation

• Update database migration documentation @dippindots (#10115)

🕵️‍♀️ Full commit logs

• Backend: v5.3.3...v5.3.4
• Frontend: cBioPortal/cbioportal-frontend@v5.3.3...v5.3.4

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.3

🧬 Features

• Disable autocommit and manually commit filters in study view @BasLee (cbioportal-frontend#4502)

🐛 Bug Fixes

• Disable oncokb fetch from MutationMapper when show_oncokb config is off @alisman (cbioportal-frontend#4572)

👷‍♀️ Testing, Configuration & Deployment

• Update circleci config to parametrize Workflow for e2e tests @haynescd (cbioportal-frontend#4570)

⚙️ REST API Changes

• fix swagger page validation errors @jfkonecn (#10101)
• Include driver filter in sv count query @BasLee (#10092)

📘 Documentation

• Update news.md @sbabyanusha (#9994)

🕵️‍♀️ Full commit logs

• Backend: v5.3.2...v5.3.3
• Frontend: cBioPortal/cbioportal-frontend@v5.3.2...v5.3.3

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.2

🧬 Features

• Allow numeric data type for custom data charts @TJMKuijpers (cbioportal-frontend#4533)

✨ Enhancements

• Update gene related search in Oncoprint and Plots tab @dippindots (cbioportal-frontend#4517)
• Oql upstream downstream fusions in oncoprint @pvannierop (cbioportal-frontend#4494)

🐛 Bug Fixes

• Apply oncokb configuration to patient page (where it was missing) @alisman (cbioportal-frontend#4568)
• Fix showNA undefined for numerical data type @TJMKuijpers (cbioportal-frontend#4562)

👷‍♀️ Testing, Configuration & Deployment

• Add screenshots and adjust waitForOncoprint @alisman (cbioportal-frontend#4573)
• Fix localdb keycloak docker image issue @fuzhaoyuan (cbioportal-frontend#4564)

🧰 Maintenance

• Update api clients and make associated changes @alisman (cbioportal-frontend#4567)

🕵️‍♀️ Full commit logs

• Backend: v5.3.1...v5.3.2
• Frontend: cBioPortal/cbioportal-frontend@v5.3.1...v5.3.2

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning