checks.yaml

name: checks
on: [push, pull_request]
jobs:
  test:
    name: test py${{ matrix.python-version }}
    runs-on: ubuntu-latest
    env:
      AWS_ACCESS_KEY_ID: ${{ secrets.DUMMY_AWS_ACCESS_KEY_ID }}
      AWS_SECRET_ACCESS_KEY: ${{ secrets.DUMMY_AWS_SECRET_ACCESS_KEY }}
      AWS_DEFAULT_REGION: us-east-2
      AWS_DEFAULT_OUTPUT: text
      DISEASE_NORM_DB_URL: http://localhost:8002
      THERAPY_NORM_DB_URL: http://localhost:8002
      THERAPY_TEST: true
    strategy:
      matrix:
        python-version: ["3.8", "3.9", "3.10", "3.11"]
    steps:
      - uses: actions/checkout@v3

      - name: Setup Python
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}

      - name: Install dependencies
        run: |
          python3 -m pip install ".[etl,test]"

      - name: Build local DynamoDB
        run: |
          chmod +x ./tests/scripts/dynamodb_run.sh
          ./tests/scripts/dynamodb_run.sh

      - name: Run tests
        run: python3 -m pytest
  lint:
    name: lint
    runs-on: ubuntu-latest
    env:
      AWS_ACCESS_KEY_ID: ${{ secrets.DUMMY_AWS_ACCESS_KEY_ID }}
      AWS_SECRET_ACCESS_KEY: ${{ secrets.DUMMY_AWS_SECRET_ACCESS_KEY }}
      AWS_DEFAULT_REGION: us-east-2
      AWS_DEFAULT_OUTPUT: text
    steps:
      - uses: actions/checkout@v3

      - name: black
        uses: psf/black@stable

      - name: ruff
        uses: chartboost/ruff-action@v1
  type_checks:
    name: type check py${{ matrix.python-version }}
    runs-on: ubuntu-latest
    env:
      AWS_ACCESS_KEY_ID: ${{ secrets.DUMMY_AWS_ACCESS_KEY_ID }}
      AWS_SECRET_ACCESS_KEY: ${{ secrets.DUMMY_AWS_SECRET_ACCESS_KEY }}
      AWS_DEFAULT_REGION: us-east-2
      AWS_DEFAULT_OUTPUT: text
    strategy:
      matrix:
        python-version: ["3.8", "3.9", "3.10", "3.11"]
    steps:
      - uses: actions/checkout@v3

      - name: Setup Python
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}

      - name: Install dependencies
        run: python3 -m pip install ".[dev]"

      - name: Check type correctness
        run: python3 -m mypy --ignore-missing-imports therapy/