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Python Code Repo Question #17

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cannin opened this issue Aug 12, 2020 · 3 comments
Open

Python Code Repo Question #17

cannin opened this issue Aug 12, 2020 · 3 comments
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@cannin
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cannin commented Aug 12, 2020

There was a GitHub repo where you had a lot of Python functions. Where is that? It'd be nice to have has many of the functions as Python code rather than notebooks.

@cannin cannin added the question Further information is requested label Aug 12, 2020
@cannin cannin added this to the GSOC Specific milestone Aug 12, 2020
@PritiShaw
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You mean this one PritiShaw/Reactome-Failed-Queries

These same functions are used in the Python Notebooks, but this is making the code redundant which will make it difficult to use in future.
Since Binder can import from other files present in the repository, so should I transfer them here and use the notebook as driver?

Thanks

@PritiShaw
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I have moved the Python functions to cannin/enhance_nlp_interaction_network_gsoc2020@package branch and made it as a Python utils package.

Installation Command
pip3 install git+git://github.com/cannin/enhance_nlp_interaction_network_gsoc2020@package

I have also added Pytest and pylint and Github Actions for CI

@cannin
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cannin commented Aug 24, 2020

Make sure the installation command is in the README

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