environment.yml

# Conda environment for the HPC Carpentry Workflows lesson
---
name: workflows
channels:
  - conda-forge      # provides most software
  - bioconda         # provides Snakemake
dependencies:
  - git              # version control system
  - libxslt          # {sandpaper} build dependency
  - matplotlib       # powerful Python plotting library
  - mpi4py           # distributed-memory parallel library for Python
  - numpy            # numerical algorithms for Python
  - pandoc           # document converter
  - perl             # pandoc/tinytex dependency
  - pip              # Python package manager
  - python=3         # Snakemake runs Python code natively
  - r-base           # basic R installation
  - r-essentials     # essential R packages
  - radian           # more colorful R REPL
  - snakemake        # workflow manager
  - pip:             # list of PyPI packages (not in Conda)
      - amdahl       # HPC Carpentry gray-box parallel program
      - termplotlib  # ASCII art plots