pyproject.toml

[build-system]
requires = ["setuptools>=64"]
build-backend = "setuptools.build_meta"

[project]
name = "roiextractors"
version = "0.5.11"
description = "Python module for extracting optical physiology ROIs and traces for various file types and formats"
readme = "README.md"
license = { file = "LICENSE.txt" }
authors = [
    { name = "Heberto Mayorquin" },
    { name = "Szonja Weigl" },
    { name = "Cody Baker" },
    { name = "Ben Dichter", email = "ben.dichter@gmail.com" },
    { name = "Alessio Buccino" },
    { name = "Paul Adkisson" },
    { name = "Alessandra Trapani" }
]
keywords = ["ROI", "extraction", "optical physiology"]
classifiers = [
    "Intended Audience :: Science/Research",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Operating System :: POSIX :: Linux",
    "Operating System :: Microsoft :: Windows",
    "Operating System :: MacOS",
    "License :: OSI Approved :: BSD License",
]
requires-python = ">=3.9"

dependencies = [
  "h5py>=2.10.0",
  "pynwb>=2.0.1",
  "tqdm>=4.48.2",
  "lazy_ops>=0.2.0",
  "dill>=0.3.2",
  "scipy>=1.5.2",
  "psutil>=5.8.0",
  "PyYAML",
  "lxml",
  "packaging"
]

[project.optional-dependencies]
full = [
    "tifffile>=2018.10.18",
    "scanimage-tiff-reader>=1.4.1.4",
    "neuroconv[video]>=0.4.6",
    "opencv-python-headless>=4.8.1.78",
    "natsort>=8.3.1",
    "isx>=1.0.4"
]
test = [
    "pytest",
    "pytest-cov",
    "parameterized==0.8.1",
    "spikeinterface>=0.100.7",
    "pytest-xdist"
]
docs = [
    "Jinja2",
    "Sphinx",
    "sphinx_rtd_theme",
    "readthedocs-sphinx-search",
    "sphinx-toggleprompt",
    "sphinx-copybutton",
    "pydata_sphinx_theme"
]

[project.urls]
"Homepage" = "https://github.com/catalystneuro/roiextractors"
"Documentation" = "https://roiextractors.readthedocs.io//"
"Changelog" = "https://github.com/catalystneuro/roiextractors/blob/main/CHANGELOG.md"

[tool.setuptools.packages.find]
where = ["src"]



[tool.black]
line-length = 120
target-version = ['py37']
include = '\.pyi?$'
extend-exclude = '''
/(
  \.toml
  |\.yml
  |\.txt
  |\.sh
  |\.git
  |\.ini
  | \.hg
  | \.mypy_cache
  | \.tox
  | \.venv
  | build
  | dist
)/
'''