From 31bb74bf1fe2bc8f42538e13fd2fad031bc25354 Mon Sep 17 00:00:00 2001
From: bielow <chris.bielow@fu-berlin.de>
Date: Fri, 11 Dec 2020 15:21:58 +0100
Subject: [PATCH] fixes #91

---
 R/qcMetric_MSMSScans.R | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/R/qcMetric_MSMSScans.R b/R/qcMetric_MSMSScans.R
index 7a999ed..dea2cbb 100644
--- a/R/qcMetric_MSMSScans.R
+++ b/R/qcMetric_MSMSScans.R
@@ -103,7 +103,7 @@ Heatmap score [MS<sup>2</sup> Scans: Intensity]: Linear score (0-100%) between 3
       dd.all = merge(log.dd.tic, log.dd.bpi, by='fc.raw.file')
       
       ## for scoring...
-      dd.ratio = dd[,list(ratio=median(total.ion.current/base.peak.intensity)), by ='fc.raw.file']
+      dd.ratio = dd[,list(ratio=median(total.ion.current/base.peak.intensity, na.rm=TRUE)), by ='fc.raw.file']
       dd.ratio