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CITATION.cff
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cff-version: 1.2.0
title: MetaFusion-Clinical
message: >-
A high-confidence metacaller for filtering and
prioritizing RNA-seq gene fusion candidates.
type: software
authors:
- family-names: Apostolides
given-names: Michael
affiliation: >-
Centre for Computational Medicine, The Hospital for
Sick Children, Toronto, ON, Canada
- family-names: Jiang
given-names: Yue
affiliation: >-
Centre for Computational Medicine, The Hospital for
Sick Children, Toronto, ON, Canada
- family-names: Li
given-names: Michael
affiliation: >-
Centre for Computational Medicine, The Hospital for
Sick Children, Toronto, ON, Canada
- family-names: Siddaway
given-names: Robert
affiliation: >-
Division of Pathology, Hospital for Sick Children, Toronto, Ontario, Canada
The Arthur and Sonia Labatt Brain Tumour Research Centre, Hospital for Sick Children, Toronto, Ontario, Canada
Cell Biology Program, Hospital for Sick Children, Toronto, Ontario, Canada
email: robert.siddaway@sickkids.ca
repository-code: 'https://github.com/ccmbioinfo/MetaFusion-Clinical'
license: BSD-3-Clause-Clear
preferred-citation:
title: >-
Clinical Implementation of MetaFusion for Accurate Cancer-Driving
Fusion Detection from RNA Sequencing
type: article
journal: Journal of Molecular Diagnostics
volume: "TBA"
issue: "TBA"
year: 2023
doi: 10.1016/j.jmoldx.2023.09.002
authors:
- family-names: Apostolides
given-names: Michael
affiliation: >-
Centre for Computational Medicine, The Hospital for Sick Children,
Toronto, ON, Canada
- family-names: Li
given-names: Michael
affiliation: >-
Division of Pathology, Hospital for Sick Children, Toronto, Ontario, Canada
- family-names: Arnoldo
given-names: Anthony
affiliation: >-
Centre for Computational Medicine, The Hospital for Sick Children,
Toronto, ON, Canada
- family-names: Ku
given-names: Michelle
affiliation: >-
The Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital
for Sick Children, Toronto, ON, Canada
Cell Biology Program, Hospital for Sick Children, Toronto, Ontario, Canada
- family-names: Husić
given-names: Mia
affiliation: >-
Centre for Computational Medicine, Hospital for Sick Children,
Toronto, Ontario, Canada
- family-names: Ramani
given-names: Arun K.
affiliation: >-
Centre for Computational Medicine, The Hospital For Sick Children,
Toronto, ON, Canada
- family-names: Brudno
given-names: Michael
affiliation: >-
Centre for Computational Medicine, The Hospital For Sick Children,
Toronto, ON, Canada
Department of Computer Science, University of Toronto, Toronto, Ontario, Canada
University Health Network, Toronto, Ontario, Canada
- family-names: Turinsky
given-names: Andrei L.
affiliation: >-
Centre for Computational Medicine, The Hospital For Sick Children,
Toronto, ON, Canada
- family-names: Hawkins
given-names: Cynthia
affiliation: >-
Division of Pathology, Hospital for Sick Children, Toronto, Ontario, Canada
The Arthur and Sonia Labatt Brain Tumour Research Centre, Hospital for Sick Children,
Toronto, Ontario, Canada
Cell Biology Program, Hospital for Sick Children, Toronto, Ontario, Canada
Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Ontario, Canada
email: cynthia.hawkins@sickkids.ca
- family-names: Siddaway
given-names: Robert
affiliation: >-
Division of Pathology, Hospital for Sick Children, Toronto, Ontario, Canada
The Arthur and Sonia Labatt Brain Tumour Research Centre, Hospital for Sick Children, Toronto, Ontario, Canada
Cell Biology Program, Hospital for Sick Children, Toronto, Ontario, Canada
email: robert.siddaway@sickkids.ca
references:
- title: "MetaFusion-Clinical reference files"
type: data
doi: "10.6084/m9.figshare.24239689.v1"
authors:
- family-names: Apostolides
given-names: Michael
affiliation: >-
Centre for Computational Medicine, The Hospital for Sick Children,
Toronto, ON, Canada
- title: "MetaFusion.clinical.simg"
type: software
doi: "10.6084/m9.figshare.14454342.v1"
authors:
- family-names: Apostolides
given-names: Michael
affiliation: >-
Centre for Computational Medicine, The Hospital for Sick Children,
Toronto, ON, Canada
- title: >-
MetaFusion: A high-confidence metacaller for filtering and prioritizing
RNA-seq gene fusion candidates
type: article
journal: Bioinformatics
volume: 37
issue: 19
year: 2021
doi: 10.1093/bioinformatics/btab249
authors:
- family-names: Apostolides
given-names: Michael
affiliation: >-
Centre for Computational Medicine, The Hospital for Sick Children,
Toronto, ON, Canada
- family-names: Jiang
given-names: Yue
affiliation: >-
Centre for Computational Medicine, The Hospital for Sick Children,
Toronto, ON, Canada
- family-names: Husić
given-names: Mia
affiliation: >-
Centre for Computational Medicine, The Hospital for Sick Children,
Toronto, ON, Canada
- family-names: Siddaway
given-names: Robert
affiliation: >-
The Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital
for Sick Children, Toronto, ON, Canada
- family-names: Hawkins
given-names: Cynthia
affiliation: >-
The Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital
for Sick Children, Toronto, ON, Canada
- family-names: Turinsky
given-names: Andrei L.
affiliation: >-
Centre for Computational Medicine, The Hospital For Sick Children,
Toronto, ON, Canada
- family-names: Brudno
given-names: Michael
affiliation: >-
Centre for Computational Medicine, The Hospital For Sick Children,
Toronto, ON, Canada
- family-names: Ramani
given-names: Arun K.
affiliation: >-
Centre for Computational Medicine, The Hospital For Sick Children,
Toronto, ON, Canada