TypeError: add_variable() got an unexpected keyword argument 'update' #50
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I'm facing the same problem! As you did , I removed the update argument. From what I see, solve () no longer requires pool size as an argument. So I removed that argument for now. I don't get that error anymore, but I keep getting other errors such as AttributeError: 'GurobiSolver' object has no attribute 'remove_constraint'. I've noticed that the arguments used in the functions differ from what is actually required. This issue has occurred with |
Hi I think yes there is something incompatible between the code and the solver, have you tried to run the code with an older version solver? I will try to do this next week and let u know if it works! And also check this website if you still need to use smetana: https://inap.denglab.org.cn/ |
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There were some changes in the latest version of *reframed (1.5.3). *You
need to uninstall it and install an older version (1.5.2 should still work).
…On Thu, Oct 24, 2024 at 1:19 PM Yuec ***@***.***> wrote:
I'm facing the same problem! As you did , I removed the update argument.
From what I see, solve () no longer requires pool size as an argument. So
I removed that argument for now. I don't get that error anymore, but I keep
getting other errors such as AttributeError: 'GurobiSolver' object has no
attribute 'remove_constraint'.
I've noticed that the arguments used in the functions differ from what is
actually required. This issue has occurred with addVariable(), solve(),
and now it is also affecting removeConstraints(). I'm not sure why this
is happening, but I suspect it may be due to a recent update in the solver
that hasn't been taken into account in the code.
Hi I think yes there is something incompatible between the code and the
solver, have you tried to run the code with an older version solver? I will
try to do this next week and let u know if it works! And also check this
website if you still need to use smetana: https://inap.denglab.org.cn/
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Hi Daniel,
Thank you for the reply!! This combination finally worked for me : CPLEX
12.10.0.0,smetana 1.2.0.python 3.6.15,reframed 1.5.1.
On Thu, Oct 24, 2024 at 9:28 PM Daniel Machado ***@***.***>
wrote:
… There were some changes in the latest version of *reframed (1.5.3). *You
need to uninstall it and install an older version (1.5.2 should still
work).
On Thu, Oct 24, 2024 at 1:19 PM Yuec ***@***.***> wrote:
> I'm facing the same problem! As you did , I removed the update argument.
>
> From what I see, solve () no longer requires pool size as an argument.
So
> I removed that argument for now. I don't get that error anymore, but I
keep
> getting other errors such as AttributeError: 'GurobiSolver' object has
no
> attribute 'remove_constraint'.
>
> I've noticed that the arguments used in the functions differ from what
is
> actually required. This issue has occurred with addVariable(), solve(),
> and now it is also affecting removeConstraints(). I'm not sure why this
> is happening, but I suspect it may be due to a recent update in the
solver
> that hasn't been taken into account in the code.
>
> Hi I think yes there is something incompatible between the code and the
> solver, have you tried to run the code with an older version solver? I
will
> try to do this next week and let u know if it works! And also check this
> website if you still need to use smetana: https://inap.denglab.org.cn/
>
> —
> Reply to this email directly, view it on GitHub
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#50 (comment)>,
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Thank you for all the help guys, This combination finally worked for me : CPLEX 12.10.0.0,smetana 1.2.0.python 3.6.15,reframed 1.5.1. |
Hi, I'm also experiencing this problem, but when I install it using the pip install refarmed command, I run into a problem: it says that the installation of python-libsbml via setup.py failed, resulting in refarmed not being installed successfully. How did you solve this and can you help me please? |
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hi! Sadly I didn't have this issue when i installed reframed, can you check
if you are in the correct python version? you can also check what is
installed by running : pip --list
…On Thu, Nov 28, 2024 at 11:02 AM 16607020803 ***@***.***> wrote:
感谢所有帮助，这个组合终于对我有用了：CPLEX 12.10.0.0，smetana 1.2.0.python 3.6.15，reframed
1.5.1。
Hi, I'm also experiencing this problem, but when I install it using the
pip install refarmed command, I run into a problem: it says that the
installation of python-libsbml via setup.py failed, resulting in refarmed
not being installed successfully. How did you solve this and can you help
me please?
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Dear developer,
I am trying to run smenata with this command:
smetana --flavor fbc2 -o test3 -v -d --molweight --solver cplex --zeros genome2.xml genome1.xml
but i received this error: TypeError: add_variable() got an unexpected keyword argument 'update'
so I removed the update argument in all relavent scripts, but then i received this error:
TypeError: solve() got an unexpected keyword argument 'pool_size'
Does anyone ever faced the same issue? I am running my program on a docker and the version i am using is:
carveme 1.6.2
cplex 22.1.1.0
memote 0.17.0
smetana 1.2.0
Python 3.9.20
and the same issue happened when i used gurobi
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