v0.6.5

Seems like github releases havent been done for a while. There are too many changes to document. However the most recent changes are summarised:

Enhancements:

• Update P.execute() to use stdin (#112 )

Bug fixes:

• bugfix add_pipe_args in cgatcore.table (#113 )

0.5.15

tidy up error handling. Allow memory issues with SLURM to pass through.

0.5.14

Merge pull request #93 from cgat-developers/AC-version0.5.14

updated version number

Basic cloud functionality

In this release we include basic functionality to allow users to interact with Amazon S3, Google Cloud and Azure storage objects.

First public release of code

This release was created for the first submission of the manuscript accompanying this code

Version 0.5.3

• rename the cgatcore.csv module to avoid name conflicts with python csv module

Version 0.5.2

• Lower-case all module names
• bugfixes around handling working directory that is different from starting directory.

First release working with cgat-apps and cgat-flow

• contributions by Genomics PLC ; #1
• added installation script and conda environments ; #2
• make pytest pass on both Linux and OSX ; #4
• snakefood (py2) does not parse Control.py correctly ; #15
• do not run P.load in the cluster ; #22
• fix os.path.relpath cache function ; #24 ; #28
• migrating CGATOxford/CGATPipelines#406 ; #26 ; #31
• migrating CGATOxford/CGATPipelines#411 ; #16
• make enforcing memory restrictions via ulimit optional ; #27
• change printconfig to work with yml files ; #32
• changes to work only with yml configuration files (ini files are no longer in use) ; #25
• update conda from 4.3 to 4.5 (solving "CXXABI_1.3.9 not found" error ; ContinuumIO/anaconda-issues#5191) ; b940e3e
• migrating CGATOxford/CGATPipelines#399 ; migrating #34
• new way of activating conda environments ; #35