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DESCRIPTION
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DESCRIPTION
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Package: redeemR
Title: R package for Regulatory multi-omics with Deep Mitochondrial mutation profiling
Version: 1.0
Authors@R:
person("Chen", "Weng", , "cweng@broadinstitute.org", role = c("aut", "cre"),
comment = c(ORCID = "0000-0003-0801-7037"))
Description: Introduce a new approach for single-cell Regulatory multi-omics (transcriptomics and chromatin accessibility) with Deep Mitochondrial mutation profiling (~10-fold increase in detection rate), or ReDeeM. redeemR is the R package that facilitates mutation refining, lineage tracing, as well multiomics integration analysis.
License: MIT LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Imports:
ape,
doMC,
doParallel,
dplyr,
foreach,
ggExtra,
ggnewscale,
ggplot2,
ggtree,
ggtreeExtra,
gridExtra,
igraph,
Matrix,
phangorn,
phytools,
pryr,
qvalue,
RColorBrewer,
reshape2,
Seurat,
stats,
tibble,
treeio,
tidytree,
Depends:
R (>= 2.10)
LazyData: true