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+ + diff --git a/assets/gsea-eBJ6qXES.js b/assets/gsea-JgZbMxCd.js similarity index 98% rename from assets/gsea-eBJ6qXES.js rename to assets/gsea-JgZbMxCd.js index aa9d551..9f070bd 100644 --- a/assets/gsea-eBJ6qXES.js +++ b/assets/gsea-JgZbMxCd.js @@ -1,4 +1,4 @@ -import{d as s,j as e}from"./index-Vd0AJzHF.js";const r={layout:"minimal",authors:["[cbenoit](www.linkedin.com/in/clement-benoit)"],date:"2024-02-15",title:"A quick overview of GSEA analysis",description:"undefined"};function t(i){const n={a:"a",div:"div",em:"em",h1:"h1",h2:"h2",header:"header",li:"li",ol:"ol",p:"p",section:"section",strong:"strong",sup:"sup",...s(),...i.components};return e.jsxs(e.Fragment,{children:[e.jsx(n.header,{children:e.jsxs(n.h1,{id:"a-quick-overview-of-gsea-analysis",children:["A quick overview of GSEA analysis",e.jsx(n.a,{"aria-hidden":"true",tabIndex:"-1",href:"#a-quick-overview-of-gsea-analysis",children:e.jsx(n.div,{"data-autolink-icon":!0})})]})}),` +import{d as s,j as e}from"./index-f84vxDIJ.js";const r={layout:"minimal",authors:["[cbenoit](www.linkedin.com/in/clement-benoit)"],date:"2024-02-15",title:"A quick overview of GSEA analysis",description:"undefined"};function t(i){const n={a:"a",div:"div",em:"em",h1:"h1",h2:"h2",header:"header",li:"li",ol:"ol",p:"p",section:"section",strong:"strong",sup:"sup",...s(),...i.components};return e.jsxs(e.Fragment,{children:[e.jsx(n.header,{children:e.jsxs(n.h1,{id:"a-quick-overview-of-gsea-analysis",children:["A quick overview of GSEA analysis",e.jsx(n.a,{"aria-hidden":"true",tabIndex:"-1",href:"#a-quick-overview-of-gsea-analysis",children:e.jsx(n.div,{"data-autolink-icon":!0})})]})}),` `,e.jsxs(n.h2,{id:"why-gsea-analysis-",children:["Why GSEA Analysis ?",e.jsx(n.a,{"aria-hidden":"true",tabIndex:"-1",href:"#why-gsea-analysis-",children:e.jsx(n.div,{"data-autolink-icon":!0})})]}),` `,e.jsxs(n.p,{children:[`Genome wide expression analysis has become become a mainstay of genomics research. 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m={layout:"default"};function o(t){return n.jsx(s,{})}function i(t={}){const{wrapper:e}={...r(),...t.components};return e?n.jsx(e,{...t,children:n.jsx(o,{...t})}):o()}export{i as default,m as frontmatter}; diff --git a/assets/index-leM4h_6W.js b/assets/index-z4Q7KmVE.js similarity index 89% rename from assets/index-leM4h_6W.js rename to assets/index-z4Q7KmVE.js index 293ce15..6557405 100644 --- a/assets/index-leM4h_6W.js +++ b/assets/index-z4Q7KmVE.js @@ -1,2 +1,2 @@ -import{d as a,j as e}from"./index-Vd0AJzHF.js";const d={layout:"minimal",title:"Blog",description:"undefined"};function o(t){const n={a:"a",div:"div",h1:"h1",header:"header",...a(),...t.components};return e.jsxs(e.Fragment,{children:[e.jsx(n.header,{children:e.jsxs(n.h1,{id:"blog",children:["Blog",e.jsx(n.a,{"aria-hidden":"true",tabIndex:"-1",href:"#blog",children:e.jsx(n.div,{"data-autolink-icon":!0})})]})}),` +import{d as a,j as e}from"./index-f84vxDIJ.js";const d={layout:"minimal",title:"Blog",description:"undefined"};function o(t){const n={a:"a",div:"div",h1:"h1",header:"header",...a(),...t.components};return e.jsxs(e.Fragment,{children:[e.jsx(n.header,{children:e.jsxs(n.h1,{id:"blog",children:["Blog",e.jsx(n.a,{"aria-hidden":"true",tabIndex:"-1",href:"#blog",children:e.jsx(n.div,{"data-autolink-icon":!0})})]})}),` `,e.jsx(n.div,{"data-blog-posts":!0})]})}function i(t={}){const{wrapper:n}={...a(),...t.components};return n?e.jsx(n,{...t,children:e.jsx(o,{...t})}):o(t)}export{i as default,d as frontmatter}; diff --git a/assets/react-timeline-P7Q6dKAd.js b/assets/react-timeline-Ma7j8FHh.js similarity index 99% rename from assets/react-timeline-P7Q6dKAd.js rename to assets/react-timeline-Ma7j8FHh.js index 87d4df5..e0ae69e 100644 --- a/assets/react-timeline-P7Q6dKAd.js +++ b/assets/react-timeline-Ma7j8FHh.js @@ -1,4 +1,4 @@ -import{r as b,p as F,g as K,e as Y,j as i}from"./index-Vd0AJzHF.js";var O={},U={exports:{}};/*! +import{r as b,p as F,g as K,e as Y,j as i}from"./index-f84vxDIJ.js";var O={},U={exports:{}};/*! Copyright (c) 2018 Jed Watson. Licensed under the MIT License (MIT), see http://jedwatson.github.io/classnames diff --git a/assets/somavardb-5G4el8Yj.js b/assets/somavardb-_sTNZdt1.js similarity index 90% rename from assets/somavardb-5G4el8Yj.js rename to assets/somavardb-_sTNZdt1.js index 242a14d..d81cd77 100644 --- a/assets/somavardb-5G4el8Yj.js +++ b/assets/somavardb-_sTNZdt1.js @@ -1,2 +1,2 @@ -import{d as a,j as e}from"./index-Vd0AJzHF.js";const d={layout:"deafult",title:"SomaVarDB",description:"undefined"};function r(t){const n={a:"a",div:"div",h1:"h1",header:"header",p:"p",...a(),...t.components};return e.jsxs(e.Fragment,{children:[e.jsx(n.header,{children:e.jsxs(n.h1,{id:"somavardb",children:["SomaVarDB",e.jsx(n.a,{"aria-hidden":"true",tabIndex:"-1",href:"#somavardb",children:e.jsx(n.div,{"data-autolink-icon":!0})})]})}),` +import{d as a,j as e}from"./index-f84vxDIJ.js";const d={layout:"deafult",title:"SomaVarDB",description:"undefined"};function r(t){const n={a:"a",div:"div",h1:"h1",header:"header",p:"p",...a(),...t.components};return e.jsxs(e.Fragment,{children:[e.jsx(n.header,{children:e.jsxs(n.h1,{id:"somavardb",children:["SomaVarDB",e.jsx(n.a,{"aria-hidden":"true",tabIndex:"-1",href:"#somavardb",children:e.jsx(n.div,{"data-autolink-icon":!0})})]})}),` `,e.jsx(n.p,{children:"Voilà l'exemple d'un premier projet"})]})}function i(t={}){const{wrapper:n}={...a(),...t.components};return n?e.jsx(n,{...t,children:e.jsx(r,{...t})}):r(t)}export{i as default,d as frontmatter}; diff --git a/blog/gsea/index.html b/blog/gsea/index.html new file mode 100644 index 0000000..b365fcb --- /dev/null +++ b/blog/gsea/index.html @@ -0,0 +1,42 @@ + + + + + + + + A quick overview of GSEA analysis – Home + + + + + + + + + + +
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A quick overview of GSEA analysis

A quick overview of GSEA analysis

+

Why GSEA Analysis ?

+

Genome wide expression analysis has become become a mainstay of genomics research. However, there is still a wide range of tools for interpreting these gene expression profiles. They all have their advantages and disadvantages, and are still evolving. This, coupled with the fact that these studies rely on the testing of a large number of hypotheses and relatively small sample sizes, lead that whole-genome expression studies in particular, to be often not reproducible. +This is why reproducibility is one of the major challenges facing studies involving whole-genome expression data. 1, 2, 3

+

Finally, interpreting lists of thousands of differentially expressed genes is a tedious exercise for the biologist.

+

The GSEA, by dezooming from the scale of the gene to that of the pathway. Improves the reproducibility of studies, while facilitating their interpetation.

+

Principles

+ +

Footnotes

+
    +
  1. +

    Timothy E. Sweeney , Winston A. Haynes , Francesco Vallania , John P. Ioannidis +and Purvesh Khatri. (2017). Methods to increase reproducibility in differential gene expression via meta-analysis. Nucleic Acids Research, Volume 45(Issue 1), Page Range. DOI ↩

    +
    2. +
  2. +

    Steven N Goodman , Daniele Fanelli , John P A Ioannidis. (2016). *What does research reproducibility mean? *. Sci Transl Med, 8(341),12. DOI ↩

    +
    3. +
  3. +

    Lianbo Yu. (2020). RNA-Seq Reproducibility Assessment of the Sequencing Quality Control Project. Cancer Inform, Volume 19 DOI ↩

    +
    4. +
+
+ + diff --git a/blog/index.html b/blog/index.html new file mode 100644 index 0000000..a20091b --- /dev/null +++ b/blog/index.html @@ -0,0 +1,22 @@ + + + + + + + + Blog – Home + + + + + + + + + + +
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Blog
+ + diff --git a/index.html b/index.html index 36c45c3..062e5aa 100644 --- a/index.html +++ b/index.html @@ -3,12 +3,22 @@ - - - + + + Home + + + + + + + -
+
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CV

I'm Clement BENOIT


I'm a Grenoble based data engineer with a specialty in omics bioinformatics , currently working +at Grenoble Alpes University Hospital (CHUGA), helping build tools to leverage health data for clinical diagnosis.

In my free time time, you can catch me training in skateboard, +looking after my plants, or exploring the beautiful +alpine mountains.


See my projectsGitHubLinkedin

benoitclement.data@gmail.com

diff --git a/initializeTheme.iife.js b/initializeTheme.iife.js new file mode 100644 index 0000000..6330285 --- /dev/null +++ b/initializeTheme.iife.js @@ -0,0 +1 @@ +(function(){"use strict";const e=window.matchMedia("(prefers-color-scheme: dark)"),t=localStorage.getItem("vocs.theme");(t||(e.matches?"dark":"light"))==="dark"&&document.documentElement.classList.add("dark"),t||e.addEventListener("change",({matches:d})=>{d?document.documentElement.classList.add("dark"):document.documentElement.classList.remove("dark")})})(); diff --git a/projects/index.html b/projects/index.html new file mode 100644 index 0000000..41c5525 --- /dev/null +++ b/projects/index.html @@ -0,0 +1,27 @@ + + + + + + + + Here are my projects – Home + + + + + + + + + + +
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CV

Here are my projects

+

OmicsVerse

+

The initial aim of the OmicsVerse portal is to host demo versions of the various data applications I create.

+

Application source code and documentation for administrators can be found on my github.

+

The following sections & pages will host detailed documentation of users.

+

If you have a genomics-oriented data application to host, don't hesitate to contact me. provided there are resources available.

+
+ + diff --git a/projects/somavardb/index.html b/projects/somavardb/index.html new file mode 100644 index 0000000..dc1a984 --- /dev/null +++ b/projects/somavardb/index.html @@ -0,0 +1,22 @@ + + + + + + + + SomaVarDB – Home + + + + + + + + + + +
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CV

SomaVarDB

+

Voilà l'exemple d'un premier projet

+ +