DESCRIPTION

Package: prismSeqR
Title: Processing Pipeline for PRISM Sequencing data
Version: 0.1.0
Authors@R: c(
    person("Lena", "Joesch-Cohen", email="ljoeschc@broadinstitute.org",
        role = c("aut")),
    person("Anup", "Jonchhe", email= "anup@broadinstitute.org",
        role = c("aut", "cre"))
    )
Description: As an alternative to the Luminex bead-based PRISM assay, the PRISM
    Sequencing assay was developed for barcode detection with Next Generation
    Sequencing. Due to different output types from sequencers vs luminex
    scanners, the sushi data processing pipeline was developed to generate the
    analogous data levels from merino and espresso.
License: `use_mit_license()`, `use_gpl3_license()` or friends to pick a
    license
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
Imports:
    magrittr,
    ShortRead,
    argparse,
    scam,
    magrittr,
    readr,
    stringr,
    dplyr,
    tidyr,
    reshape2,
    sets,
    cdsrbiomarker
Suggests: 
    testthat (>= 3.0.0)
Config/testthat/edition: 3