From ea8a07ae0016cdd381443afd99ab5aa775a07c30 Mon Sep 17 00:00:00 2001 From: Konstantin Androsov Date: Tue, 11 Jun 2024 12:34:12 +0200 Subject: [PATCH] Deployed 98589f0 with MkDocs version: 1.6.0 --- 404.html | 74 +++++ analysis/index.html | 659 ++++++++++++++++++++++++++++++++++++++ hh_bbtautau/index.html | 172 ++++++++-- index.html | 203 ++++++------ search/search_index.json | 2 +- sitemap.xml.gz | Bin 127 -> 127 bytes stat_inference/index.html | 606 +++++++++++++++++++++++++++++++++++ 7 files changed, 1578 insertions(+), 138 deletions(-) create mode 100644 analysis/index.html create mode 100644 stat_inference/index.html diff --git a/404.html b/404.html index eb96218a..630c0fac 100644 --- a/404.html +++ b/404.html @@ -183,6 +183,23 @@ +
  • + + + + + + Analysis + + +
    • + + + + + + +
  • @@ -196,6 +213,23 @@ + + + + +
  • + + + + + + Statistical inference + + +
    • + + + @@ -273,6 +307,26 @@ +
  • + + + + + Analysis + + + + +
    • + + + + + + + + +
  • @@ -287,6 +341,26 @@ + + + + + + +
  • + + + + + Statistical inference + + + + +
    • + + + diff --git a/analysis/index.html b/analysis/index.html new file mode 100644 index 00000000..8ffa37e2 --- /dev/null +++ b/analysis/index.html @@ -0,0 +1,659 @@ + + + + + + + + + + + + + + + + + + + + + + + Analysis - FLAF + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    + + + + Skip to content + + +
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    + + + + + + + + + + + + + + + + + + + + +

    Common analysis steps

    +

    Remarks:

    +
      +
    • +

      commands bellow assume that ERA variable is set. E.g. + 

      ERA=Run2_2016
+
      + Alternatively you can add ERA=Run2_2016; ... in front of each command.

      +
      • +
    • +

      version argument alows to produce different versions of the same task. In the command below --version dev is used for illustration purposes. You can replace it with your version naming.

      +
      • +
    • --workflow can be htcondor or local. It is recommended to develop and test locally and then switch to htcondor for production. In examples below --workflow local is used for illustration purposes.
      • +
    • when running on htcondor it is recommended to add --transfer-logs to the command to transfer logs to local.
      • +
    • --customisations argument is used to pass custom parameters to the task in form param1=value1,param2=value2,...
      • +
    • if you want to run only on few files, you can specify list of branches to run using --branches argument. E.g. --branches 2,7-10,17.
      • +
    • to get status, use --print-stauts N,K where N is depth for task dependencies, K is depths for file dependencies. E.g. --print-status 3,1.
      • +
    • to remove task output use --remove-output N,a, where N is depth for task dependencies. E.g. --remove-output 0,a.
      • +
    +

    Create input file list

    +
    law run InputFileTask  --period ${ERA} --version dev
+
    +

    Create anaCache

    +
    law run AnaCacheTask  --period ${ERA} --workflow local --version dev
+
    +

    Create anaTuple

    +
    law run AnaTupleTask --period ${ERA} --workflow local --version dev
+
    + + + + + + + + + + + + + +
    +
    + + + +
    + + + +
    + + + +
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    +
    + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/hh_bbtautau/index.html b/hh_bbtautau/index.html index c53c5c76..87533a43 100644 --- a/hh_bbtautau/index.html +++ b/hh_bbtautau/index.html @@ -9,9 +9,11 @@ - + + + @@ -189,6 +191,23 @@ + +
  • + + + + + + Analysis + + +
    • + + + + + + @@ -205,6 +224,23 @@ + + + + +
  • + + + + + + Statistical inference + + +
    • + + + @@ -280,6 +316,26 @@ + + +
  • + + + + + Analysis + + + + +
    • + + + + + + + @@ -437,6 +493,15 @@ + + +
  • + + + How to run HHbtag training skim ntuple production + + +
    • @@ -447,6 +512,26 @@ + + + + + + +
  • + + + + + Statistical inference + + + + +
    • + + + @@ -582,6 +667,15 @@ + + +
  • + + + How to run HHbtag training skim ntuple production + + +
    • @@ -618,57 +712,61 @@

    Simple commands

    DeepTau 2p1

    AnaCache Production

    -
    year=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run InputFileTask  --period Run2_${year} --version ${dir}
-year=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run AnaCacheTask  --period Run2_${year} --workflow htcondor --version ${dir} --transfer-logs
+
    era=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run InputFileTask  --period ${era} --version ${dir}
+era=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run AnaCacheTask  --period ${era} --workflow htcondor --version ${dir} --transfer-logs
 
    
 
    AnaTuple Production (AFTER AnaCacheTask)
    
-
    year=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run InputFileTask  --period Run2_${year} --version ${dir}
-year=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run AnaTupleTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs
-year=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; mkdir /eos/user/v/vdamante/HH_bbtautau_resonant_Run2/${dir}/Run2_${year}/data
-year=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run DataMergeTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs
+
    era=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run InputFileTask  --period ${era} --version ${dir}
+era=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run AnaTupleTask --period ${era} --version ${dir} --workflow htcondor --transfer-logs
+era=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; mkdir /eos/user/v/vdamante/HH_bbtautau_resonant_Run2/${dir}/Run2_${era}/data
+era=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run DataMergeTask --period ${era} --version ${dir} --workflow htcondor --transfer-logs
 
    
 
    AnaCacheTuple Production (AFTER AnaTupleTask)
    
-
    year=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run AnaCacheTupleTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs
+
    era=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run AnaCacheTupleTask --period Run2_${era} --version ${dir} --workflow htcondor --transfer-logs
 
    
 
    Histograms Production (AFTER AnaTupleTask but NOT NECESSAIRLY AnaCacheTupleTask)
    
-
    year=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run HistProducerFileTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs
-year=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run HistProducerSampleTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs
-year=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run  MergeTask --period Run2_${year}  --version ${dir}  --workflow htcondor --transfer-logs
+
    era=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run HistProducerFileTask --period Run2_${era} --version ${dir} --workflow htcondor --transfer-logs
+era=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run HistProducerSampleTask --period Run2_${era} --version ${dir} --workflow htcondor --transfer-logs
+era=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run  MergeTask --period Run2_${era}  --version ${dir}  --workflow htcondor --transfer-logs
 
    
 
    Work in progress
-
    year=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run  HistRebinnerTask --period Run2_${year}  --version ${dir}  --workflow htcondor --transfer-logs #This does something only for KinFit_m, currently
-year=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run  HaddMergedTask --period Run2_${year}  --version ${dir}  --workflow htcondor --transfer-logs
+
    era=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run  HistRebinnerTask --period Run2_${era}  --version ${dir}  --workflow htcondor --transfer-logs #This does something only for KinFit_m, currently
+era=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run  HaddMergedTask --period Run2_${era}  --version ${dir}  --workflow htcondor --transfer-logs
 
    
 
    DeepTau 2p5
    
 
    AnaCache Production
    
-
    year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run InputFileTask  --period Run2_${year} --version ${dir}
-year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run AnaCacheTask  --period Run2_${year} --workflow htcondor --version ${dir} --transfer-logs --customisations deepTauVersion=2p5
+
    era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run InputFileTask  --period Run2_${era} --version ${dir}
+era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run AnaCacheTask  --period Run2_${era} --workflow htcondor --version ${dir} --transfer-logs --customisations deepTauVersion=2p5
 
    
 
    AnaTuple Production (AFTER AnaCacheTask)
    
-
    year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run InputFileTask  --period Run2_${year} --version ${dir}
-year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run AnaTupleTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs --customisations deepTauVersion=2p5
-year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; mkdir /eos/user/v/vdamante/HH_bbtautau_resonant_Run2/${dir}/Run2_${year}/data
-year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run DataMergeTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs --customisations deepTauVersion=2p5 # not sure it's needed in this step but I add it usually
+
    era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run InputFileTask  --period Run2_${era} --version ${dir}
+era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run AnaTupleTask --period Run2_${era} --version ${dir} --workflow htcondor --transfer-logs --customisations deepTauVersion=2p5
+era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; mkdir /eos/user/v/vdamante/HH_bbtautau_resonant_Run2/${dir}/Run2_${era}/data
+era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run DataMergeTask --period Run2_${era} --version ${dir} --workflow htcondor --transfer-logs --customisations deepTauVersion=2p5 # not sure it's needed in this step but I add it usually
 
    
 
    AnaCacheTuple Production (AFTER AnaTupleTask)
    
-
    year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run AnaCacheTupleTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs --customisations deepTauVersion=2p5
-year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; mkdir -p /eos/home-k/kandroso/cms-hh-bbtautau/anaCache/Run2_${year}/data/${dir}
-year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run DataCacheMergeTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs --customisations deepTauVersion=2p5
+
    era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run AnaCacheTupleTask --period Run2_${era} --version ${dir} --workflow htcondor --transfer-logs --customisations deepTauVersion=2p5
+era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; mkdir -p /eos/home-k/kandroso/cms-hh-bbtautau/anaCache/Run2_${era}/data/${dir}
+era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run DataCacheMergeTask --period Run2_${era} --version ${dir} --workflow htcondor --transfer-logs --customisations deepTauVersion=2p5
 
    
 
    Histograms Production (AFTER AnaTupleTask but NOT NECESSAIRLY AnaCacheTupleTask)
    
-
    year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run HistProducerFileTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs
-year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run HistProducerSampleTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs
-year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run  MergeTask --period Run2_${year}  --version ${dir}  --workflow htcondor --transfer-logs
+
    era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run HistProducerFileTask --period Run2_${era} --version ${dir} --workflow htcondor --transfer-logs
+era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run HistProducerSampleTask --period Run2_${era} --version ${dir} --workflow htcondor --transfer-logs
+era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run  MergeTask --period Run2_${era}  --version ${dir}  --workflow htcondor --transfer-logs
 
    
 
    Work in progress
-
    year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run  HistRebinnerTask --period Run2_${year}  --version ${dir}  --workflow htcondor --transfer-logs #This does something only for KinFit_m, currently
-year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run  HaddMergedTask --period Run2_${year}  --version ${dir}  --workflow htcondor --transfer-logs
+
    era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run  HistRebinnerTask --period Run2_${era}  --version ${dir}  --workflow htcondor --transfer-logs #This does something only for KinFit_m, currently
+era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run  HaddMergedTask --period Run2_${era}  --version ${dir}  --workflow htcondor --transfer-logs
 
    
 
    Tips
    
 
      
 
    1. For local production switch from --workflow htcondor to --workflow local
      2. 
 
    2. To produce specific branches add --branches X1,X2,..., where Xi are the branch numbers
      3. 
 
    
+
    How to run HHbtag training skim ntuple production
    
+
    python Studies/HHBTag/CreateTrainingSkim.py --inFile $CENTRAL_STORAGE/prod_v1/nanoAOD/2018/GluGluToBulkGravitonToHHTo2B2Tau_M-350.root --outFile output/skim.root --mass 350 --sample GluGluToBulkGraviton --year 2018 >& EventInfo.txt
+python Common/SaveHisto.txt --inFile $CENTRAL_STORAGE/prod_v1/nanoAOD/2018/GluGluToBulkGravitonToHHTo2B2Tau_M-350.root --outFile output/skim.root
+
    
 
 
 
@@ -704,7 +802,7 @@ 
    Tips&par
       
     
   
diff --git a/index.html b/index.html
index a4966479..1cdd0d2c 100644
--- a/index.html
+++ b/index.html
@@ -10,7 +10,7 @@
       
       
       
-        
+        
       
       
       
@@ -192,6 +192,23 @@
   
   
   
+    
  • 
+      
+        
+  
+    
+  
+  Analysis
+
+      
+    
    • 
+  
+
+      
+        
+  
+  
+  
     
  • 
       
         
@@ -205,6 +222,23 @@
   
 
       
+        
+  
+  
+  
+    
  • 
+      
+        
+  
+    
+  
+  Statistical inference
+
+      
+    
    • 
+  
+
+      
     
   
    
 
@@ -326,46 +360,30 @@
   
 
       
-        
  • 
-  
-    
-      How to run limits
-    
-  
+    
   
-
    • 
+
       
-        
  • 
-  
-    
-      How to run nanoAOD->nanoAOD skims production
-    
-  
+    
    • 
   
-
+
+    
       
-        
  • 
-  
-    
-      How to run HHbtag training skim ntuple production
-    
-  
-  
-
    • 
       
-        
  • 
-  
-    
-      How to run Histogram production
-    
-  
   
-
    • 
-      
-    
   
-
-      
+  
+  
+    
  • 
+      
+        
+  
+  
+    Analysis
+  
+  
+
+      
     
    • 
   
 
@@ -390,6 +408,26 @@
   
 
     
+      
+      
+  
+  
+  
+  
+    
  • 
+      
+        
+  
+  
+    Statistical inference
+  
+  
+
+      
+    
    • 
+  
+
+    
   
 
                   
    
@@ -432,42 +470,6 @@
     
   
   
-
-      
-        
  • 
-  
-    
-      How to run limits
-    
-  
-  
-
    • 
-      
-        
  • 
-  
-    
-      How to run nanoAOD->nanoAOD skims production
-    
-  
-  
-
    • 
-      
-        
  • 
-  
-    
-      How to run HHbtag training skim ntuple production
-    
-  
-  
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-      
-        
  • 
-  
-    
-      How to run Histogram production
-    
-  
-  
 
    • 
       
     
@@ -518,53 +520,38 @@ 
    How to install
    git clone --recursive git@github.com:cms-flaf/Framework.git FLAF
 
    
 
+
  • 
+
    Create a user customisation file config/user_custom.yaml. It should contain all user-specific modifications that you don't want to be committed to the central repository. Below is example of minimal content of the file (replace USER_NAME and ANA_FOLDER with your values):
+    
    fs_default:
+    - 'T3_CH_CERNBOX:/store/user/USER_NAME/ANA_FOLDER/'
+fs_anaCache:
+    - 'T3_CH_CERNBOX:/store/user/USER_NAME/ANA_FOLDER/'
+fs_anaTuple:
+    - 'T3_CH_CERNBOX:/store/user/USER_NAME/ANA_FOLDER/'
+analysis_config_area: config/HH_bbtautau
+compute_unc_variations: true
+store_noncentral: true
+
    
+
    • 
 
 
    How to load environment
    
-
    Following command activates the framework environment:
-
    source env.sh
-
    
-
    How to run limits
    
 
      
 
    1. 
-
      As a temporary workaround, if you want to run multiplie commands, to avoid delays to load environment each time run:
-  
      cmbEnv /bin/zsh # or /bin/bash
-
      
-  Alternatively add cmbEnv in front of each command. E.g.
-  
      cmbEnv python3 -c 'print("hello")'
+
      Following command activates the framework environment:
+    
      source env.sh
 
      
 
      2. 
 
    2. 
-
      Create datacards.
-  
      python3 StatInference/dc_make/create_datacards.py --input PATH_TO_SHAPES  --output PATH_TO_CARDS --config PATH_TO_CONFIG
-
      
-  Available configurations:
      
-
+
      For the new installation or after you implement new law tasks, you need to update the law index:
+    
      law index --verbose
+
      
 
      3. 
 
    3. 
-
      Run limits.
-  
      law run PlotResonantLimits --version dev --datacards 'PATH_TO_CARDS/*.txt' --xsec fb --y-log
-
      
-  Hints:
      
-
        
-
      • use --workflow htcondor to submit on HTCondor (by default it runs locally)
        • 
-
      • add --remove-output 4,a,y to remove previous output files
        • 
-
      • add --print-status 0 to get status of the workflow (where 0 is a depth). Useful to get the output file name.
        • 
-
      • for more details see cms-hh inference documentation
        • 
-
      
+
      Initialize voms proxy:
+    
      voms-proxy-init -voms cms -rfc -valid 192:00
+
      
 
      4. 
 
    
-
    How to run nanoAOD->nanoAOD skims production
    
-
    law run CreateNanoSkims --version prod_v1 --periods 2016,2016APV,2017,2018 --ignore-missing-samples True
-
    
-
    How to run HHbtag training skim ntuple production
    
-
    python Studies/HHBTag/CreateTrainingSkim.py --inFile $CENTRAL_STORAGE/prod_v1/nanoAOD/2018/GluGluToBulkGravitonToHHTo2B2Tau_M-350.root --outFile output/skim.root --mass 350 --sample GluGluToBulkGraviton --year 2018 >& EventInfo.txt
-python Common/SaveHisto.txt --inFile $CENTRAL_STORAGE/prod_v1/nanoAOD/2018/GluGluToBulkGravitonToHHTo2B2Tau_M-350.root --outFile output/skim.root
-
    
-
    How to run Histogram production
    
-
    Please, see the file all_commands.txt (to be updated)
    
 
 
 
@@ -601,13 +588,13 @@ 
    How to run Histogram production
+          
             
    
               
                 Next
               
               
    
-                HH->bbtautau
+                Analysis
               
    
             
    
             
    
diff --git a/search/search_index.json b/search/search_index.json
index 213a1b5f..05c66906 100644
--- a/search/search_index.json
+++ b/search/search_index.json
@@ -1 +1 @@
-{"config":{"lang":["en"],"separator":"[\\s\\-]+","pipeline":["stopWordFilter"]},"docs":[{"location":"","title":"FLAF","text":"
    FLAF - Flexible LAW-based Analysis Framework. Task workflow managed is done via LAW (Luigi Analysis Framework).
    "},{"location":"#how-to-install","title":"How to install","text":"
       
    1.  
      Setup ssh keys:
       
         
      • On GitHub settings/keys
        •  
      • On CERN GitLab profile/keys
        •  
       
      2.  
    2.  
      Clone the repository:   
      git clone --recursive git@github.com:cms-flaf/Framework.git FLAF\n
       
      3.  
    "},{"location":"#how-to-load-environment","title":"How to load environment","text":"
    Following command activates the framework environment: 
    source env.sh\n
    "},{"location":"#how-to-run-limits","title":"How to run limits","text":"
       
    1.  
      As a temporary workaround, if you want to run multiplie commands, to avoid delays to load environment each time run:   
      cmbEnv /bin/zsh # or /bin/bash\n
         Alternatively add cmbEnv in front of each command. E.g.   
      cmbEnv python3 -c 'print(\"hello\")'\n
       
      2.  
    2.  
      Create datacards.   
      python3 StatInference/dc_make/create_datacards.py --input PATH_TO_SHAPES  --output PATH_TO_CARDS --config PATH_TO_CONFIG\n
         Available configurations:
       
         
      • For X->HH>bbtautau Run 2: StatInference/config/x_hh_bbtautau_run2.yaml
        •  
      • For X->HH->bbWW Run 3: StatInference/config/x_hh_bbww_run3.yaml
        •  
       
      3.  
    3.  
      Run limits.   
      law run PlotResonantLimits --version dev --datacards 'PATH_TO_CARDS/*.txt' --xsec fb --y-log\n
         Hints:
       
         
      • use --workflow htcondor to submit on HTCondor (by default it runs locally)
        •  
      • add --remove-output 4,a,y to remove previous output files
        •  
      • add --print-status 0 to get status of the workflow (where 0 is a depth). Useful to get the output file name.
        •  
      • for more details see cms-hh inference documentation
        •  
       
      4.  
    "},{"location":"#how-to-run-nanoaod-nanoaod-skims-production","title":"How to run nanoAOD->nanoAOD skims production","text":"
    law run CreateNanoSkims --version prod_v1 --periods 2016,2016APV,2017,2018 --ignore-missing-samples True\n
    "},{"location":"#how-to-run-hhbtag-training-skim-ntuple-production","title":"How to run HHbtag training skim ntuple production","text":"
    python Studies/HHBTag/CreateTrainingSkim.py --inFile $CENTRAL_STORAGE/prod_v1/nanoAOD/2018/GluGluToBulkGravitonToHHTo2B2Tau_M-350.root --outFile output/skim.root --mass 350 --sample GluGluToBulkGraviton --year 2018 >& EventInfo.txt\npython Common/SaveHisto.txt --inFile $CENTRAL_STORAGE/prod_v1/nanoAOD/2018/GluGluToBulkGravitonToHHTo2B2Tau_M-350.root --outFile output/skim.root\n
    "},{"location":"#how-to-run-histogram-production","title":"How to run Histogram production","text":"
    Please, see the file all_commands.txt (to be updated)
    "},{"location":"hh_bbtautau/","title":"Simple commands","text":""},{"location":"hh_bbtautau/#deeptau-2p1","title":"DeepTau 2p1","text":""},{"location":"hh_bbtautau/#anacache-production","title":"AnaCache Production","text":"
    year=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run InputFileTask  --period Run2_${year} --version ${dir}\nyear=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run AnaCacheTask  --period Run2_${year} --workflow htcondor --version ${dir} --transfer-logs\n
    "},{"location":"hh_bbtautau/#anatuple-production-after-anacachetask","title":"AnaTuple Production (AFTER AnaCacheTask)","text":"
    year=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run InputFileTask  --period Run2_${year} --version ${dir}\nyear=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run AnaTupleTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs\nyear=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; mkdir /eos/user/v/vdamante/HH_bbtautau_resonant_Run2/${dir}/Run2_${year}/data\nyear=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run DataMergeTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs\n
    "},{"location":"hh_bbtautau/#anacachetuple-production-after-anatupletask","title":"AnaCacheTuple Production (AFTER AnaTupleTask)","text":"
    year=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run AnaCacheTupleTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs\n
    "},{"location":"hh_bbtautau/#histograms-production-after-anatupletask-but-not-necessairly-anacachetupletask","title":"Histograms Production (AFTER AnaTupleTask but NOT NECESSAIRLY AnaCacheTupleTask)","text":"
    year=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run HistProducerFileTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs\nyear=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run HistProducerSampleTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs\nyear=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run  MergeTask --period Run2_${year}  --version ${dir}  --workflow htcondor --transfer-logs\n
     
    Work in progress 
    year=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run  HistRebinnerTask --period Run2_${year}  --version ${dir}  --workflow htcondor --transfer-logs #This does something only for KinFit_m, currently\nyear=2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run  HaddMergedTask --period Run2_${year}  --version ${dir}  --workflow htcondor --transfer-logs\n
    "},{"location":"hh_bbtautau/#deeptau-2p5","title":"DeepTau 2p5","text":""},{"location":"hh_bbtautau/#anacache-production_1","title":"AnaCache Production","text":"
    year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run InputFileTask  --period Run2_${year} --version ${dir}\nyear=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run AnaCacheTask  --period Run2_${year} --workflow htcondor --version ${dir} --transfer-logs --customisations deepTauVersion=2p5\n
    "},{"location":"hh_bbtautau/#anatuple-production-after-anacachetask_1","title":"AnaTuple Production (AFTER AnaCacheTask)","text":"
    year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run InputFileTask  --period Run2_${year} --version ${dir}\nyear=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run AnaTupleTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs --customisations deepTauVersion=2p5\nyear=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; mkdir /eos/user/v/vdamante/HH_bbtautau_resonant_Run2/${dir}/Run2_${year}/data\nyear=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run DataMergeTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs --customisations deepTauVersion=2p5 # not sure it's needed in this step but I add it usually\n
    "},{"location":"hh_bbtautau/#anacachetuple-production-after-anatupletask_1","title":"AnaCacheTuple Production (AFTER AnaTupleTask)","text":"
    year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run AnaCacheTupleTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs --customisations deepTauVersion=2p5\nyear=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; mkdir -p /eos/home-k/kandroso/cms-hh-bbtautau/anaCache/Run2_${year}/data/${dir}\nyear=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run DataCacheMergeTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs --customisations deepTauVersion=2p5\n
    "},{"location":"hh_bbtautau/#histograms-production-after-anatupletask-but-not-necessairly-anacachetupletask_1","title":"Histograms Production (AFTER AnaTupleTask but NOT NECESSAIRLY AnaCacheTupleTask)","text":"
    year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run HistProducerFileTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs\nyear=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run HistProducerSampleTask --period Run2_${year} --version ${dir} --workflow htcondor --transfer-logs\nyear=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run  MergeTask --period Run2_${year}  --version ${dir}  --workflow htcondor --transfer-logs\n
     
    Work in progress 
    year=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run  HistRebinnerTask --period Run2_${year}  --version ${dir}  --workflow htcondor --transfer-logs #This does something only for KinFit_m, currently\nyear=2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run  HaddMergedTask --period Run2_${year}  --version ${dir}  --workflow htcondor --transfer-logs\n
    "},{"location":"hh_bbtautau/#tips","title":"Tips","text":"
       
    1. For local production switch from --workflow htcondor to --workflow local
      2.  
    2. To produce specific branches add --branches X1,X2,..., where Xi are the branch numbers
      3.  
    "}]}
\ No newline at end of file
+{"config":{"lang":["en"],"separator":"[\\s\\-]+","pipeline":["stopWordFilter"]},"docs":[{"location":"","title":"FLAF","text":"
    FLAF - Flexible LAW-based Analysis Framework. Task workflow managed is done via LAW (Luigi Analysis Framework).
    "},{"location":"#how-to-install","title":"How to install","text":"
       
    1.  
      Setup ssh keys:
       
         
      • On GitHub settings/keys
        •  
      • On CERN GitLab profile/keys
        •  
       
      2.  
    2.  
      Clone the repository:   
      git clone --recursive git@github.com:cms-flaf/Framework.git FLAF\n
       
      3.  
    3.  
      Create a user customisation file config/user_custom.yaml. It should contain all user-specific modifications that you don't want to be committed to the central repository. Below is example of minimal content of the file (replace USER_NAME and ANA_FOLDER with your values):     
      fs_default:\n    - 'T3_CH_CERNBOX:/store/user/USER_NAME/ANA_FOLDER/'\nfs_anaCache:\n    - 'T3_CH_CERNBOX:/store/user/USER_NAME/ANA_FOLDER/'\nfs_anaTuple:\n    - 'T3_CH_CERNBOX:/store/user/USER_NAME/ANA_FOLDER/'\nanalysis_config_area: config/HH_bbtautau\ncompute_unc_variations: true\nstore_noncentral: true\n
       
      4.  
    "},{"location":"#how-to-load-environment","title":"How to load environment","text":"
       
    1.  
      Following command activates the framework environment:     
      source env.sh\n
       
      2.  
    2.  
      For the new installation or after you implement new law tasks, you need to update the law index:     
      law index --verbose\n
       
      3.  
    3.  
      Initialize voms proxy:     
      voms-proxy-init -voms cms -rfc -valid 192:00\n
       
      4.  
    "},{"location":"analysis/","title":"Common analysis steps","text":"
    Remarks:
     
       
    •  
      commands bellow assume that ERA variable is set. E.g.     
      ERA=Run2_2016\n
           Alternatively you can add ERA=Run2_2016; ... in front of each command.
       
      •  
    •  
      version argument alows to produce different versions of the same task. In the command below --version dev is used for illustration purposes. You can replace it with your version naming.
       
      •  
    • --workflow can be htcondor or local. It is recommended to develop and test locally and then switch to htcondor for production. In examples below --workflow local is used for illustration purposes.
      •  
    • when running on htcondor it is recommended to add --transfer-logs to the command to transfer logs to local.
      •  
    • --customisations argument is used to pass custom parameters to the task in form param1=value1,param2=value2,...
      •  
    • if you want to run only on few files, you can specify list of branches to run using --branches argument. E.g. --branches 2,7-10,17.
      •  
    • to get status, use --print-stauts N,K where N is depth for task dependencies, K is depths for file dependencies. E.g. --print-status 3,1.
      •  
    • to remove task output use --remove-output N,a, where N is depth for task dependencies. E.g. --remove-output 0,a.
      •  
    "},{"location":"analysis/#create-input-file-list","title":"Create input file list","text":"
    law run InputFileTask  --period ${ERA} --version dev\n
    "},{"location":"analysis/#create-anacache","title":"Create anaCache","text":"
    law run AnaCacheTask  --period ${ERA} --workflow local --version dev\n
    "},{"location":"analysis/#create-anatuple","title":"Create anaTuple","text":"
    law run AnaTupleTask --period ${ERA} --workflow local --version dev\n
    "},{"location":"hh_bbtautau/","title":"Simple commands","text":""},{"location":"hh_bbtautau/#deeptau-2p1","title":"DeepTau 2p1","text":""},{"location":"hh_bbtautau/#anacache-production","title":"AnaCache Production","text":"
    era=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run InputFileTask  --period ${era} --version ${dir}\nera=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run AnaCacheTask  --period ${era} --workflow htcondor --version ${dir} --transfer-logs\n
    "},{"location":"hh_bbtautau/#anatuple-production-after-anacachetask","title":"AnaTuple Production (AFTER AnaCacheTask)","text":"
    era=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run InputFileTask  --period ${era} --version ${dir}\nera=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run AnaTupleTask --period ${era} --version ${dir} --workflow htcondor --transfer-logs\nera=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; mkdir /eos/user/v/vdamante/HH_bbtautau_resonant_Run2/${dir}/Run2_${era}/data\nera=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run DataMergeTask --period ${era} --version ${dir} --workflow htcondor --transfer-logs\n
    "},{"location":"hh_bbtautau/#anacachetuple-production-after-anatupletask","title":"AnaCacheTuple Production (AFTER AnaTupleTask)","text":"
    era=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run AnaCacheTupleTask --period Run2_${era} --version ${dir} --workflow htcondor --transfer-logs\n
    "},{"location":"hh_bbtautau/#histograms-production-after-anatupletask-but-not-necessairly-anacachetupletask","title":"Histograms Production (AFTER AnaTupleTask but NOT NECESSAIRLY AnaCacheTupleTask)","text":"
    era=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run HistProducerFileTask --period Run2_${era} --version ${dir} --workflow htcondor --transfer-logs\nera=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run HistProducerSampleTask --period Run2_${era} --version ${dir} --workflow htcondor --transfer-logs\nera=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run  MergeTask --period Run2_${era}  --version ${dir}  --workflow htcondor --transfer-logs\n
     
    Work in progress 
    era=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run  HistRebinnerTask --period Run2_${era}  --version ${dir}  --workflow htcondor --transfer-logs #This does something only for KinFit_m, currently\nera=Run2_2016; dir=v8_deepTau2p1_onlyTauTau_HTT; law run  HaddMergedTask --period Run2_${era}  --version ${dir}  --workflow htcondor --transfer-logs\n
    "},{"location":"hh_bbtautau/#deeptau-2p5","title":"DeepTau 2p5","text":""},{"location":"hh_bbtautau/#anacache-production_1","title":"AnaCache Production","text":"
    era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run InputFileTask  --period Run2_${era} --version ${dir}\nera=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run AnaCacheTask  --period Run2_${era} --workflow htcondor --version ${dir} --transfer-logs --customisations deepTauVersion=2p5\n
    "},{"location":"hh_bbtautau/#anatuple-production-after-anacachetask_1","title":"AnaTuple Production (AFTER AnaCacheTask)","text":"
    era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run InputFileTask  --period Run2_${era} --version ${dir}\nera=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run AnaTupleTask --period Run2_${era} --version ${dir} --workflow htcondor --transfer-logs --customisations deepTauVersion=2p5\nera=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; mkdir /eos/user/v/vdamante/HH_bbtautau_resonant_Run2/${dir}/Run2_${era}/data\nera=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run DataMergeTask --period Run2_${era} --version ${dir} --workflow htcondor --transfer-logs --customisations deepTauVersion=2p5 # not sure it's needed in this step but I add it usually\n
    "},{"location":"hh_bbtautau/#anacachetuple-production-after-anatupletask_1","title":"AnaCacheTuple Production (AFTER AnaTupleTask)","text":"
    era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run AnaCacheTupleTask --period Run2_${era} --version ${dir} --workflow htcondor --transfer-logs --customisations deepTauVersion=2p5\nera=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; mkdir -p /eos/home-k/kandroso/cms-hh-bbtautau/anaCache/Run2_${era}/data/${dir}\nera=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run DataCacheMergeTask --period Run2_${era} --version ${dir} --workflow htcondor --transfer-logs --customisations deepTauVersion=2p5\n
    "},{"location":"hh_bbtautau/#histograms-production-after-anatupletask-but-not-necessairly-anacachetupletask_1","title":"Histograms Production (AFTER AnaTupleTask but NOT NECESSAIRLY AnaCacheTupleTask)","text":"
    era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run HistProducerFileTask --period Run2_${era} --version ${dir} --workflow htcondor --transfer-logs\nera=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run HistProducerSampleTask --period Run2_${era} --version ${dir} --workflow htcondor --transfer-logs\nera=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run  MergeTask --period Run2_${era}  --version ${dir}  --workflow htcondor --transfer-logs\n
     
    Work in progress 
    era=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run  HistRebinnerTask --period Run2_${era}  --version ${dir}  --workflow htcondor --transfer-logs #This does something only for KinFit_m, currently\nera=Run2_2016; dir=v8_deepTau2p5_onlyTauTau_HTT; law run  HaddMergedTask --period Run2_${era}  --version ${dir}  --workflow htcondor --transfer-logs\n
    "},{"location":"hh_bbtautau/#tips","title":"Tips","text":"
       
    1. For local production switch from --workflow htcondor to --workflow local
      2.  
    2. To produce specific branches add --branches X1,X2,..., where Xi are the branch numbers
      3.  
    "},{"location":"hh_bbtautau/#how-to-run-hhbtag-training-skim-ntuple-production","title":"How to run HHbtag training skim ntuple production","text":"
    python Studies/HHBTag/CreateTrainingSkim.py --inFile $CENTRAL_STORAGE/prod_v1/nanoAOD/2018/GluGluToBulkGravitonToHHTo2B2Tau_M-350.root --outFile output/skim.root --mass 350 --sample GluGluToBulkGraviton --year 2018 >& EventInfo.txt\npython Common/SaveHisto.txt --inFile $CENTRAL_STORAGE/prod_v1/nanoAOD/2018/GluGluToBulkGravitonToHHTo2B2Tau_M-350.root --outFile output/skim.root\n
    "},{"location":"stat_inference/","title":"Statistical inference","text":""},{"location":"stat_inference/#how-to-run-limits","title":"How to run limits","text":"
       
    1.  
      As a temporary workaround, if you want to run multiplie commands, to avoid delays to load environment each time run:   
      cmbEnv /bin/zsh # or /bin/bash\n
         Alternatively add cmbEnv in front of each command. E.g.   
      cmbEnv python3 -c 'print(\"hello\")'\n
       
      2.  
    2.  
      Create datacards.   
      python3 StatInference/dc_make/create_datacards.py --input PATH_TO_SHAPES  --output PATH_TO_CARDS --config PATH_TO_CONFIG\n
         Available configurations:
       
         
      • For X->HH>bbtautau Run 2: StatInference/config/x_hh_bbtautau_run2.yaml
        •  
      • For X->HH->bbWW Run 3: StatInference/config/x_hh_bbww_run3.yaml
        •  
       
      3.  
    3.  
      Run limits.   
      law run PlotResonantLimits --version dev --datacards 'PATH_TO_CARDS/*.txt' --xsec fb --y-log\n
         Hints:
       
         
      • use --workflow htcondor to submit on HTCondor (by default it runs locally)
        •  
      • add --remove-output 4,a,y to remove previous output files
        •  
      • add --print-status 0 to get status of the workflow (where 0 is a depth). Useful to get the output file name.
        •  
      • for more details see cms-hh inference documentation
        •  
       
      4.  
    "}]}
\ No newline at end of file
diff --git a/sitemap.xml.gz b/sitemap.xml.gz
index daa020a77d4c372190a67c5e0877c45ae45309fa..52e25ab356fdffb6e0d1e94d4d8e32a4534ef853 100644
GIT binary patch
delta 13
Ucmb=gXP58h;7BM>pU7ST02{gl4gdfE

delta 13
Ucmb=gXP58h;7HixKasrx035RfI{*Lx

diff --git a/stat_inference/index.html b/stat_inference/index.html
new file mode 100644
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--- /dev/null
+++ b/stat_inference/index.html
@@ -0,0 +1,606 @@
+
+
+
+  
+    
+      
+      
+      
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+        
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+      
+        Statistical inference - FLAF
+      
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+  
+    
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+      
+      
+    
+  
+
+
+  
    Statistical inference
    
+
+
    How to run limits
    
+
      
+
    1. 
+
      As a temporary workaround, if you want to run multiplie commands, to avoid delays to load environment each time run:
+  
      cmbEnv /bin/zsh # or /bin/bash
+
      
+  Alternatively add cmbEnv in front of each command. E.g.
+  
      cmbEnv python3 -c 'print("hello")'
+
      
+
      2. 
+
    2. 
+
      Create datacards.
+  
      python3 StatInference/dc_make/create_datacards.py --input PATH_TO_SHAPES  --output PATH_TO_CARDS --config PATH_TO_CONFIG
+
      
+  Available configurations:
      
+
+
      3. 
+
    3. 
+
      Run limits.
+  
      law run PlotResonantLimits --version dev --datacards 'PATH_TO_CARDS/*.txt' --xsec fb --y-log
+
      
+  Hints:
      
+
        
+
      • use --workflow htcondor to submit on HTCondor (by default it runs locally)
        • 
+
      • add --remove-output 4,a,y to remove previous output files
        • 
+
      • add --print-status 0 to get status of the workflow (where 0 is a depth). Useful to get the output file name.
        • 
+
      • for more details see cms-hh inference documentation
        • 
+
      
+
      4. 
+
    
+
+
+
+
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+              
    
+            
    
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+    
    
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+    
    
+    
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+        
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+        
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+  
+
\ No newline at end of file