CompHydroTutorial.tex

\documentclass[11pt]{book}

% include figures
\usepackage{epsfig,wrapfig}

% prefer PDF to PNG
\DeclareGraphicsExtensions{%
  .pdf, .png}

\graphicspath{{preface/}{intro/}{finite-volume/}{advection/}{burgers/}{diffusion/}{Euler/}{incompressible/}{multigrid/}{multiphysics/}{low_mach/}{pyro/}}

% AMS symbols
\usepackage{amsmath,amssymb}

% cancel
\usepackage{cancel}

% Palatino font (and math symbols) -- looks nicer than the standard
% LaTeX font
\usepackage{mathpazo}
%\usepackage{helvet}

% URLs (special font for monospace)
%\usepackage{inconsolata}
%\usepackage[T1]{fontenc}


% margins and paper size -- this needs to come before fncychap
% see http://stackoverflow.com/questions/3729099/latex-paper-size
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\geometry{papersize={7in,10in}}

% crop marks (for printing)
%\usepackage[
%  noinfo,
%  cam,
%  cross,                % crosses as marks
%  width=7.25in,         % the width of the galley
%  height=10.25in,        % the height of the galley
%  center                % actual page is centered on the galley
%]{crop}


% this needs to be done before the fncychap style, since that will 
% redo the chapter stuff
\usepackage{sectsty}
\allsectionsfont{\sffamily}


% chapter title styles
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\ChRuleWidth{1pt}

% part page style                                                                                  
% see http://tex.stackexchange.com/questions/6609/problems-with-part-labels-using-titlesec         
\usepackage{titlesec}

\titleformat{\part}[display]
   {\bfseries\sffamily\Huge\filcenter}
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   {\hrule}




% hyperlinks -- load after fncychap
\usepackage{hyperref}

% color package
\usepackage{color}
\definecolor{mygray}{gray}{0.5}


% custom hrule for title page
\newcommand{\HRule}{\rule{\linewidth}{0.125mm}}

\newcommand{\pyro}{{\sf pyro}}
\newcommand{\git}{{\tt git}}



% footer
%% \usepackage{fancyhdr}
%% \pagestyle{fancy}
%% \fancyfoot[LO,LE]{\footnotesize \sffamily \color{mygray} M.\ Zingale---Notes on the Euler equations}
%% \fancyfoot[RO,RE]{\footnotesize \sffamily \color{mygray} (\today)}
%% \fancyfoot[CO,CE]{\thepage}
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%% \renewcommand{\headrulewidth}{0.0pt}
%% \renewcommand{\footrulewidth}{0.0pt}



% don't make the chapter/section headings uppercase.  See the fancyhdr
% documentation (section 9)
\usepackage{fancyhdr}
\renewcommand{\chaptermark}[1]{%  
\markboth{\chaptername
\ \thechapter.\ #1}{}}

\renewcommand{\sectionmark}[1]{\markright{\thesection---#1}}


% don't put a header on blank pages, see
% http://www.latex-community.org/forum/viewtopic.php?f=4&p=51559
% change ``plain'' to ``empty'' to eliminate the page number
\makeatletter
\renewcommand*\cleardoublepage{\clearpage\if@twoside
\ifodd\c@page\else
\hbox{}
\thispagestyle{empty}
\newpage
\if@twocolumn\hbox{}\newpage\fi\fi\fi}
\makeatother


% skip a bit of space between paragraphs, to enhance readability
\usepackage{parskip}


% captions
\usepackage{caption}
\renewcommand{\captionfont}{\footnotesize}
\renewcommand{\captionlabelfont}{\footnotesize}
\setlength{\captionmargin}{3em}


%-----------------------------------------------------------------------------
% define a new environment for exercises
%\newcounter{exercise}    % simple way -- no TOC list
% toclot allows us to make a list of exercises
% the new environment stuff came from http://www.dickimaw-books.com/latex/novices/html/newenv.html
\usepackage{tocloft}
\newcommand{\listexercisename}{List of Exercises}

% the [chapter] argumenet here means that we reset the numbers each chapter
% exc is the short name we give to this new list
\newlistof[chapter]{exercise}{exc}{\listexercisename}  
\usepackage{changepage}   % used to adjust the margins within the environment

% environment name, with optional argument for display in the list of
% exercises
\newenvironment{exercise}[1][]
{% begin code 
  %
  % this indents our text from the left and right
  \begin{adjustwidth}{1.0cm}{1.0cm}
  %
  % this skips a line before 
  \par\vspace{\baselineskip}\noindent 
  %
  % this increments our counter
  \refstepcounter{exercise}%
  %
  % this displays the exercise number and starts italics
  \textbf{Exercise \theexercise:}\ \begin{itshape}% 
  %
  % this adds an entry to our custom List of Exercises
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}% 
{% end code -- this is done at the end of the environment
  %
  % stop the italics
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  %
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  %
  % this skips a line at the end
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}

% this makes the List of Exercises have a line break before each chapter,
% just like in the main ToC.
%
% this has a bug -- it does not omit the space if the chapter has 0 exercises
\usepackage{etoolbox}
\preto\section{%
  \ifnum\value{chapter}=1{}\else   % don't skip before Ch 1
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}

% indent these the standard amount for a chaptered section
\setlength{\cftexerciseindent}{1.5em}

%-----------------------------------------------------------------------------

% license
\usepackage{ccicons}

% computer keyboard symbol
\usepackage{marvosym}

\newcommand{\evm}{{(-)}}
\newcommand{\evz}{{(\circ)}}
\newcommand{\evp}{{(+)}}
\newcommand{\enu}{{(\nu)}}

% shortcuts
\newcommand{\Dux}{\overline{\Delta u}^{(x)}}
\newcommand{\Duy}{\overline{\Delta u}^{(y)}}

\newcommand{\Dvx}{\overline{\Delta v}^{(x)}}
\newcommand{\Dvy}{\overline{\Delta v}^{(y)}}


% for dotted lines in the matrics/arrays
\usepackage{arydshln}



% fonts for TOC, list of figures, etc
\renewcommand*\listfigurename{\bf\textsf{List of Figures}}
\renewcommand*\listexercisename{\bf\textsf{List of Exercises}}
\renewcommand*\contentsname{\bf\textsf{Table of Contents}}



% short table of contents
\usepackage{shorttoc}


% pack more figures on a page
\usepackage{float}
\renewcommand\floatpagefraction{.9}
\renewcommand\topfraction{.9}
\renewcommand\bottomfraction{.9}
\renewcommand\textfraction{.1}   


\newcommand{\hydroex}{{\sf hydro\_examples}}
\newcommand{\hydroexdoit}[1]{{\color{red} \LARGE \Keyboard}\/ \hydroex: {\tt #1}}

\usepackage{multirow}


% MarginPars                                                                    
\setlength{\marginparwidth}{0.75in}
\newcommand{\MarginPar}[1]{\marginpar{\vskip-\baselineskip\raggedright\tiny\sffamily\hrule\smallskip{\color{red}#1}\par\smallskip\hrule}}



\begin{document}

\frontmatter

\begin{titlepage}

\ \\[2.5in]
\begin{center}
\HRule\\[0.5em]
{\Huge \textsf{{
Lecture Notes on\\[0.1em]
Computational Hydrodynamics\\[0.3em]
for Astrophysics}}
}
\HRule
\\[2em]

{\Large \sf Michael Zingale} \\ {\sf Stony Brook University}
\end{center}

\vfill

\begin{flushright}
\today
\end{flushright}

\end{titlepage}

\pagestyle{plain}

\null \vfill 

\noindent \ccCopy\ 2013, 2014 Michael Zingale \\
\noindent document git version: \input git_info.tex

\noindent the source for these notes are available online (via \git): 
\url{https://github.com/zingale/numerical_exercises}

\noindent \ccbyncsa \\
\noindent This work is licensed under the Creative Commons
Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA
4.0) license.


\clearpage


\shorttoc{Chapter Listing}{0}

\clearpage


\setcounter{tocdepth}{2}
\tableofcontents

\clearpage

\listoffigures
\addcontentsline{toc}{chapter}{list of figures}

\clearpage

\listofexercise
\addcontentsline{toc}{chapter}{list of exercises}

\clearpage

\chapter*{preface}
\chaptermark{preface}
\addcontentsline{toc}{chapter}{preface}

\input preface/preface.tex

\clearpage

\pagestyle{headings}

\renewcommand{\chaptermark}[1]{%  
\markboth{\chaptername
\ \thechapter.\ #1}{}}

\renewcommand{\sectionmark}[1]{\markright{\thesection---#1}}


\mainmatter

%\part{Basics}

\chapter{Simulation Overview}

\input intro/intro.tex

%\addtocontents{exc}{\protect\addvspace{10pt}}%
\chapter{Finite-Volume Grids}

\input finite-volume/finite-volume.tex

%\part{Hyperbolic Problems}

%\addtocontents{exc}{\protect\addvspace{10pt}}%
\chapter{Advection}

\input advection/advection.tex

%\addtocontents{exc}{\protect\addvspace{10pt}}%
\chapter{Burgers' Equation}

\input burgers/burgers.tex

%\addtocontents{exc}{\protect\addvspace{10pt}}%
\chapter{Euler Equations}

\input Euler/Euler.tex


%\part{Elliptic, Parabolic Problems, and Mixed-Type Problems}

%\addtocontents{exc}{\protect\addvspace{10pt}}%
\chapter{Multigrid and Elliptic Equations}

\input multigrid/multigrid.tex

%\addtocontents{exc}{\protect\addvspace{10pt}}%
\chapter{Diffusion}

\input diffusion/diffusion.tex

%\addtocontents{exc}{\protect\addvspace{10pt}}%
\chapter{Multiphysics Applications}

\input multiphysics/multiphysics.tex


%\part{Low Speed Hydrodynamics}

%\addtocontents{exc}{\protect\addvspace{10pt}}%
\chapter{Incompressible Flow and Projection Methods}

\input incompressible/incompressible.tex

\chapter{Low Mach Number Methods}

\input low_mach/low_mach.tex


%\part{Appendices}

\appendix

\chapter{Using \hydroex}

\input hydro_examples/hydro_examples.tex

\chapter{Using \pyro}

\input pyro/pyro.tex

%% \chapter{Software Engineering Practices}

%% \input software-engineering/software-engineering.tex

\backmatter

\addcontentsline{toc}{chapter}{References}

\bibliographystyle{plain}
\bibliography{refs}

\end{document}