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tests_bayes.yml
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---
name: tests bayesian model selection
# Uses the cron schedule for github actions
#
# https://docs.github.com/en/free-pro-team@latest/actions/reference/events-that-trigger-workflows#scheduled-events
#
# ┌───────────── minute (0 - 59)
# │ ┌───────────── hour (0 - 23)
# │ │ ┌───────────── day of the month (1 - 31)
# │ │ │ ┌───────────── month (1 - 12 or JAN-DEC)
# │ │ │ │ ┌───────────── day of the week (0 - 6 or SUN-SAT)
# │ │ │ │ │
# │ │ │ │ │
# │ │ │ │ │
# * * * * *
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
on:
push:
branches: [main]
pull_request:
branches: [main]
schedule:
- cron: 0 0 1,15 * *
# Allows you to run this workflow manually from the Actions tab
workflow_dispatch:
jobs:
tests:
if: github.repository_owner == 'cpp-lln-lab'
runs-on: ubuntu-latest
steps:
- name: Install Node
uses: actions/setup-node@v3
with:
node-version: 18
- name: Install python
uses: actions/setup-python@v4
with:
python-version: '3.11'
- name: Install dependencies
run: |
sudo apt-get -y -qq update
sudo apt-get install -y git-annex
python -m pip install --upgrade pip setuptools
pip install datalad
- name: Clone bidspm
uses: actions/checkout@v3
with:
submodules: recursive
fetch-depth: 0
- name: Get data
run: make -C demos/bayes data_ds000114
- name: Install validators
run: make install
- name: Install SPM
run: |
git clone https://github.com/spm/spm12.git --depth 1
- name: Copy Macs toolbox to SPM inputs_folder
run: cp -rv lib/MACS spm12/toolbox/MACS
- name: Install MATLAB
uses: matlab-actions/setup-matlab@v1.2.4
with:
release: R2022b
- name: Run system tests MATLAB BMS
uses: matlab-actions/run-command@v1.2.1
with:
command: cd(fullfile(getenv('GITHUB_WORKSPACE'), '.github', 'workflows')); run system_tests_bms};