test-demo.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "from alignmentfreegraph import AlignmentFreeGraph\n",
    "db = AlignmentFreeGraph(configuration=\"credentials.json\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "db.query(\"MATCH ()-[r]->() RETURN COUNT(r) AS total_relationships\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "db.query(\"MATCH (n) RETURN COUNT(n) AS total_nodes\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "db.set_k(5)\n",
    "ht = db.get_hashtable()\n",
    "print(\"- Hash table with k=5\")\n",
    "print(f\"- HashTable length: {len(ht)}\")\n",
    "print(f\"- Number of paths: {len(set([arc for el in ht for arc in ht[el][1]]))}\")\n",
    "ht"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "db.set_k(10)\n",
    "ht = db.get_hashtable()\n",
    "print(\"- Hash table with k=5\")\n",
    "print(f\"- HashTable length: {len(ht)}\")\n",
    "print(f\"- Number of paths: {len(set([arc for el in ht for arc in ht[el][1]]))}\")\n",
    "ht\n",
    "db.get_hashtable()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "test = \"GACCGAGACATTTATATAAC\"\n",
    "db.sequence_from_hash(test)"
   ]
  }
 ],
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