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proteins.py
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proteins.py
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MYOD1_HUMAN = "MELLSPPLRDVDLTAPDGSLCSFATTDDFYDDPCFDSPDLRFFEDLDPRLMHVGALLKPEEHSHFPAAVHPAPGAREDEHVRAPSGHHQAGRCLLWACKACKRKTTNADRRKAATMRERRRLSKVNEAFETLKRCTSSNPNQRLPKVEILRNAIRYIEGLQALLRDQDAAPPGAAAAFYAPGPLPPGRGGEHYSGDSDASSPRSNCSDGMMDYSGPPSGARRRNCYEGAYYNEAPSEPRPGKSAAVSSLDCLSSIVERISTESPAAPALLLADVPSESPPRRQEAAAPSEGESSGDPTQSPDAAPQCPAGANPNPIYQVL"
TAL1_HUMAN = "MTERPPSEAARSDPQLEGRDAAEASMAPPHLVLLNGVAKETSRAAAAEPPVIELGARGGPGGGPAGGGGAARDLKGRDAATAEARHRVPTTELCRPPGPAPAPAPASVTAELPGDGRMVQLSPPALAAPAAPGRALLYSLSQPLASLGSGFFGEPDAFPMFTTNNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLAKLLNDQEEEGTQRAKTGKDPVVGAGGGGGGGGGGAPPDDLLQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR"
MYOD1_MOUSE = "MELLSPPLRDIDLTGPDGSLCSFETADDFYDDPCFDSPDLRFFEDLDPRLVHMGALLKPEEHAHFPTAVHPGPGAREDEHVRAPSGHHQAGRCLLWACKACKRKTTNADRRKAATMRERRRLSKVNEAFETLKRCTSSNPNQRLPKVEILRNAIRYIEGLQALLRDQDAAPPGAAAFYAPGPLPPGRGSEHYSGDSDASSPRSNCSDGMMDYSGPPSGPRRQNGYDTAYYSEAARESRPGKSAAVSSLDCLSSIVERISTDSPAAPALLLADAPPESPPGPPEGASLSDTEQGTQTPSPDAAPQCPAGSNPNAIYQVL"
MYOD1_CHICK = "MDLLGPMEMTEGSLCSFTAADDFYDDPCFNTSDMHFFEDLDPRLVHVGGLLKPEEHPHTRAPPREPTEEEHVRAPSGHHQAGRCLLWACKACKRKTTNADRRKAATMRERRRLSKVNEAFETLKRCTSTNPNQRLPKVEILRNAIRYIESLQALLREQEDAYYPVLEHYSGESDASSPRSNCSDGMMEYSGPPCSSRRRNSYDSSYYTESPNDPKHGKSSVVSSLDCLSSIVERISTDNSTCPILPPAEAVAEGSPCSPQEGGNLSDSGAQIPSPTNCTPLPQESSSSSSSNPIYQVL"
MYODA_XENLA = "MELLPPPLRDMEVTEGSLCAFPTPDDFYDDPCFNTSDMSFFEDLDPRLVHVTLLKPEEPHHNEDEHVRAPSGHHQAGRCLLWACKACKRKTTNADRRKAATMRERRRLSKVNEAFETLKRYTSTNPNQRLPKVEILRNAIRYIESLQALLHDQDEAFYPVLEHYSGDSDASSPRSNCSDGMMDYNSPPCGSRRRNSYDSSFYSDSPNDSRLGKSSVISSLDCLSSIVERISTQSPSCPVPTAVDSGSEGSPCSPLQGETLSERVITIPSPSNTCTQLSQDPSSTIYHVL"
MYOD1_DANRE = "MELSDIPFPIPSADDFYDDPCFNTNDMHFFEDLDPRLVHVSLLKPDEHHHIEDEHVRAPSGHHQAGRCLLWACKACKRKTTNADRRKAATMRERRRLSKVNDAFETLKRCTSTNPNQRLPKVEILRNAISYIESLQALLRSQEDNYYPVLEHYSGDSDASSPRSNCSDGMMDFMGPTCQTRRRNSYDSSYFNDTPNADARNNKNSVVSSLDCLSSIVERISTETPACPVLSVPEGHEESPCSPHEGSVLSDTGTTAPSPTSCPQQQAQETIYQVL"
Q8IU24_BRABE = "MEFVELSSCRFDATPTFCDRPAAPNATVLPGEHFPVPNGSYEDQGDGHVLAPGPSFHGPGRCLLWACKACKKKTVPIDRRKAATMRERRRLVKVNEAFDILKKKSCANPNQRLPKVEILRNAISYIEQLHKLLRDSKENSSGEVSDTSAPSPGSCSDGMAAHSPHSFCTDTSGNSSWEQGDGQPGNGYENQSCGNTVSSLDCLSLIVQSISTIEGEENNNASNTPR"
MYOD_DROME = "MTKYNSGSSEMPAAQTIKQEYHNGYGQPTHPGYGFSAYSQQNPIAHPGQNPHQTLQNFFSRFNAVGDASAGNGGAASISANGSGSSCNYSHANHHPAELDKPLGMNMTPSPIYTTDYDDENSSLSSEEHVLAPLVCSSAQSSRPCLTWACKACKKKSVTVDRRKAATMRERRRLRKVNEAFEILKRRTSSNPNQRLPKVEILRNAIEYIESLEDLLQESSTTRDGDNLAPSLSGKSCQSDYLSSYAGAYLEDKLSFYNKHMEKYGQFTDFDGNANGSSLDCLNLIVQSINKSTTSPIQNKATPSASDTQSPPSSGATAPTSLHVNFKRKCST"
LIN32_CAEEL = "MSWEQYQMYVPQCHPSFMYQGSIQSTMTTPLQSPNFSLDSPNYPDSLSNGGGKDDKKKCRRYKTPSPQLLRMRRSAANERERRRMNTLNVAYDELREVLPEIDSGKKLSKFETLQMAQKYIECLSQILKQDSKNENLKSKSG"
SYFM_HUMAN = "MVGSALRRGAHAYVYLVSKASHISRGHQHQAWGSRPPAAECATQRAPGSVVELLGKSYPQDDHSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDGESLQLFEQSSRSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINFHGEWLEVLGCGVMEQQLVNSAGAQDRIGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNINQKVKFQPLSKYPAVINDISFWLPSENYAENDFYDLVRTIGGDLVEKVDLIDKFVHPKTHKTSHCYRITYRHMERTLSQREVRHIHQALQEAAVQLLGVEGRF"
proteins = { "P15172": MYOD1_HUMAN, "P17542": TAL1_HUMAN, "P10085":MYOD1_MOUSE, "P16075":MYOD1_CHICK, "P13904":MYODA_XENLA, "Q90477":MYOD1_DANRE, "Q8IU24":Q8IU24_BRABE, "P22816":MYOD_DROME, "Q10574":LIN32_CAEEL, "O95363":SYFM_HUMAN }