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pyproject.toml
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pyproject.toml
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[tool.poetry]
name = "manifold"
version = "0.0.1"
description = ""
authors = ["Anomymous authors"]
readme = "README.md"
packages = [{include = "manifold"}, {include="experiment_utils"}, {include="experiment_data"}]
[tool.poetry.dependencies]
python = ">=3.10,<3.12"
jax = "^0.4.20"
jaxlib = "^0.4.20"
jaxtyping = "^0.2.23"
gpjax = "^0.8.0"
matplotlib = "^3.8.2"
adjusttext = "^1.0.4"
plotly = "^5.18.0"
scikit-learn = "^1.4.0"
pandas = "^2.2.0"
nltk = "^3.8.1"
tqdm = "^4.66.1"
[tool.poetry.group.test.dependencies]
pytest = "^7.2.2"
pytest-cov = "^4.0.0"
pytest-pretty = "^1.1.1"
pytest-xdist = "^3.2.1"
coverage = "^7.2.2"
absolufy-imports = "^0.3.1"
xdoctest = "^1.1.1"
mktestdocs = "^0.2.1"
[tool.poetry.group.dev.dependencies]
black = "^23.7.0"
isort = "^5.12.0"
pylint = "^2.17.1"
nox = "^2022.11.21"
ruff = "^0.0.259"
pre-commit = "^3.2.2"
nbstripout = "^0.6.1"
pydocstyle = "^6.3.0"
codespell = "^2.2.4"
asv = "^0.6.0"
interrogate = "^1.5.0"
equinox = "^0.11.3"
[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"
[tool.black] # https://black.readthedocs.io/en/stable/usage_and_configuration/the_basics.html#configuration-via-a-file
line-length = 88
target-version = ["py310"]
[tool.pytest.ini_options] # https://docs.pytest.org/en/latest/reference/reference.html#ini-options-ref
# addopts = "--color=yes --doctest-modules --exitfirst --failed-first --strict-config --strict-markers --typeguard-packages=my_package --verbosity=2 --junitxml=reports/pytest.xml"
filterwarnings = ["error", "ignore::DeprecationWarning"]
testpaths = ["manifold", "tests"]
xfail_strict = true
[tool.ruff] # https://github.com/charliermarsh/ruff
fix = true
cache-dir = "~/.cache/ruff"
dummy-variable-rgx = "^_$"
exclude = ["docs/"]
ignore-init-module-imports = true
line-length = 88
select = [
# pyflakes
"F",
# pycodestyle
"E",
"W",
# flake8-2020
"YTT",
# flake8-bugbear
"B",
# flake8-quotes
"Q",
# pylint
"PLE",
"PLR",
"PLW",
# misc lints
"PIE",
# flake8-pyi
"PYI",
# tidy imports
"TID",
# implicit string concatenation
"ISC",
# type-checking imports
"TCH",
]
ignore = [
# space before : (needed for how black formats slicing)
# "E203", # not yet implemented
# module level import not at top of file
"E402",
# do not assign a lambda expression, use a def
"E731",
"E501",
"PGH001",
"RET504",
"S101",
"F722",
'PLR2004',
"PLR0913",
]
unfixable = ["ERA001", "F401", "F841", "T201", "T203"]
src = ["manifold", "experiment_utils", "experiment_data"]
target-version = "py38"
[tool.ruff.pydocstyle]
convention = "google"
[tool.ruff.per-file-ignores]
"manifold/__init__.py" = ['I', 'F401', 'E402', 'D104']
[tool.isort]
profile = "black"
combine_as_imports = true
force_sort_within_sections = true
force_grid_wrap = 2
skip = 'docs'
[tool.coverage.report] # https://coverage.readthedocs.io/en/latest/config.html#report
fail_under = 50
precision = 1
show_missing = true
skip_covered = true
[tool.coverage.run] # https://coverage.readthedocs.io/en/latest/config.html#run
branch = true
command_line = "--module pytest"
data_file = "reports/.coverage"
source = ["src"]
[tool.coverage.xml] # https://coverage.readthedocs.io/en/latest/config.html#xml
output = "reports/coverage.xml"
[tool.poetry-dynamic-versioning]
enable = true
vcs = "git"
[tool.poetry-dynamic-versioning.substitution]
files = ["manifold/__init__.py"]